| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1593 |
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| Symbol | |
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| ID | 5109251 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1754898 |
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| End bp | 1758335 |
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| Gene Length | 3438 bp |
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| Protein Length | 1145 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640502821 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001187089 |
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| Protein GI | 146306624 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.383279 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCGTAC TGCGTCTTCC GTCTCTACCG GCCAGCGCCG GCAAACAGCA ATGGGGCAAT
CTGCCTGGTG CCGCCCTGTC CCTGGCCATC GCCGAAGCGG CCAGCAATGC CGGACGCTTC
ACTCTGGTGC TCACCGAAGG CAGCCAGAGC GCCGAGCGCC TGCAGGAAGA GCTGGCATTC
TTCGCGCCGG ACCTGCCCGT GCTGCACTTT CCGGACTGGG AAACGCTGCC CTACGACGTC
TTCTCGCCGC ACCAGGACAT CATTTCCCAG CGTATCGCCA CGCTCTACCG ACTGCCGCAG
CTGAGCCGCG GCATCCTCGT AGTGCCGATC GCCACCGCCC TACACCGCCT GGCGCCCAAG
CGCTTTCTGC TCGGCAGCAG TCTGGTGCTG GACGTGGGCC AGAAGCTCGA CGTCGAGCAG
ATGCGTACGC GCCTGGAGGC CGCCGGCTAC CGCTGCGTCG ACACCGTGTA CGAGCACGGC
GAGTTCGCCG TGCGCGGCGC GCTGATCGAC CTGTTCCCCA TGGGCAGCGA GGTGCCCTAC
CGCATCGACC TGTTCGACGA TGAAATCGAA ACCCTGCGCA CCTTCGACCC GGAAAACCAG
CGCTCGGTGG ACAAGGTGGA GTCGATCCGC CTGCTGCCGG CGCGCGAATT CCCGCTGGAG
AAGAAGGCCG TCAGCGATTT TCGCGGGCGC TTTCGCGAGC GTTTCGACGT GGATTTCCGC
CGCTGTCCGA TCTATCAGGA CCTTTCCAGC GGCATCACCC CGGCCGGTAT CGAGTACTAC
CTGCCGCTGT TCTTCGAGGA AACCGGCACC CTGTTCGACT ACCTGCCGGG CGACACCCAG
GTGTTCTCCC TGCCCGGCAT CGAAAAGGCC GCCGAGCACT TCTGGACCGA CGCGCGCAAC
CGCTACGAGG ACCGCCGCGT CGACCCCGAG CGCCCACTGC TGCCGCCGGC CGATATCTTC
CTGCCGGTGG AAGACTGCTT CGCCCGCCTG AAGAACTGGC CGCGCGTGGT GGTCAATCAG
GACGACATCG AACCCGGTGT CGGCCAGACC CGCTTCGAGG CGCGCGCCCT GCCCGACCTG
GCGATCCAGG CCAAGGCCGG CGAGCCGCTG GCGGCGCTGC GCCGCTTCAT CGAGGAATAT
CAGGGCCGCG TGCTGTTCTG CGCCGAGTCG GCCGGGCGCC GCGAGGTGCT GCTGGAGCTG
CTTGCCCGTC TCAAGCTCAA GCCCAAGGAA GTCGACGGCT GGCCGGCGTT CGTCGAAAGC
GGCGAACGCC TGAACATCTG CATCGCGCCG CTGGACGAGG GCCTGCTGCT CGATGATCTG
GCGCTGATCG CCGAAAGCCC GCTGTTCGGC CAGCGCGTCA TGCAGCGTCG TCGCCGCGAG
AAGGGTCGCG ACGGTGGCGA CAACGTGATC AAGAACCTCA CCGAACTGCG CGAAGGCGCG
CCGGTGGTGC ACATCGATCA CGGCGTCGGT CGCTACCTGG GCCTGGTGAC CATGGAGTTC
GACGGCCAGG CCGCCGAATT CCTTGCCCTG CAGTACGCCG ACGAGGCCAA GCTCTACGTA
CCGGTGGCCA GCCTGCACCT GATCGCCCGC TACAGCGGCA GCGACGATGC CCTGGCGCCG
CTGCACCGCC TCGGCTCGGA AACCTGGCAG AAAGCCAAGC GCAAGGCCGC CGAACAGGTG
CGCGACGTAG CCGCCGAACT GCTCGACATC TACGCCCGCC GCGCCGCCCG CGAGGGTTTC
GCCTTTCAGG ACCCGGCCCT GGACTACGCC ACCTTCAGCG CCGGCTTCCC CTTCGAGGAA
ACCCCGGATC AGCAGGCCGC CATCGACGCC GTGCGCGCCG ACATGCTGGC CGGCAAGCCG
ATGGATCGCC TGGTCTGCGG CGACGTCGGC TTCGGCAAGA CCGAGGTGGC CATGCGCGCC
GCCTTCATCG CCGTGCACAG CGGCAAGCAG GTAGCCGTGC TGGTGCCCAC CACCCTGCTC
GCCCAGCAGC ACTACAACAG CTTCCGCGAC CGCTTCGCCG ACTGGCCGGT GAAGGTCGAG
GTGATGAGCC GCTTCAAGAG CGCCAAGGAA GTCGAAGGCG CTGTGCAGCA ATTGGCCGAA
GGCAAGGTGG ACATCGTCAT CGGCACCCAC AAGCTGCTGC AGGACGACGT CAAGTTTCAC
AATCTGGGCC TGGTGATCAT CGACGAGGAG CACCGTTTCG GCGTGCGCCA GAAGGAGCAG
CTCAAGGCCC TGCGCAGCGA GGTCGACATC CTCACCCTCA CCGCCACGCC GATTCCGCGC
ACGCTGAACA TGGCCGTGGC CGGCATGCGC GACCTGTCGA TCATCGCCAC GCCGCCGGCG
CGGCGCCTGT CGGTACGTAC CTTCGTCATG GAGGAGAACA AGCCGACCAT CAAGGAAGCG
CTGCTGCGTG AGCTGCTGCG CGGCGGCCAG GTGTACTACC TGCACAACGA TGTGAAGACC
ATCGACAAAT GTGCCAGTGA GCTGGCCGAA CTGGTGCCCG AGGCGCGCAT CGGCGTCGGC
CACGGTCAGA TGCGCGAGCG CGAGCTGGAA CAGGTGATGA GCGACTTCTA CCACAAGCGC
TTCAACGTGC TGGTGGCCTC GACCATCATC GAAACCGGCA TCGACGTGCC TAGCGCCAAC
ACCATCATCA TCGAGCGTGC CGACAAGTTC GGCCTGGCCC AGCTGCACCA GCTGCGCGGC
CGTGTCGGCC GCAGCCACCA CCAGGCCTAC GCCTACCTGC TCACGCCGCC GCGCAAGAGC
ATGACCGACG ATGCGCAGAA GCGCCTGGAG GCCATCGCCG GTGCACAAGA CTTGGGCGCC
GGCTTTATCC TCGCCACCCA TGACCTGGAA ATCCGCGGCG CCGGCGAGCT GCTCGGCGAT
GGTCAGAGCG GGCAGATCCA GGCCGTCGGC TTCACCCTCT ACATGGAAAT GCTGGAAAGG
GCCGTGAAGG CCATCCAGAA AGGCGAGCAG CCCAACCTCG ATCAGCCGCT GGGCGGCGGC
CCGGAGATCA ACCTGCGCGT ACCGGCGCTG ATCCCCGAGG ACTACCTGCC TGACGTGCAT
GCGCGCCTGA TCCTCTACAA GCGCATCGCC TCGGCCACCG ACGAGGACGG CCTGAAAGAG
CTGCAGGTGG AGATGATCGA CCGCTTCGGC CTGCTGCCGG AGCCGACCAA GCACCTGATG
CGCCTGACCC TGCTCAAGCT GCAGGCCGAC AAGCTGGGCA TCACCAAGGT GGACGCCGGC
CCGCAGGGCG GCCGTATCGA GTTCGCCGCG GAAACCTGCG TCGACCCGCT GACCCTGATC
AAGCTGATCC AGGCCCAACC GAAACGCTAC AAGTTCGAAG GCGCCACCGT CTTCAAGATC
CAGGTGCCGA TGGAGCGCGC GGAAGAACGC TTCAACACCC TGGAAGCCCT GTTCGAGCGC
CTCGCGCCCA CCACCTGA
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| Protein sequence | MSVLRLPSLP ASAGKQQWGN LPGAALSLAI AEAASNAGRF TLVLTEGSQS AERLQEELAF
FAPDLPVLHF PDWETLPYDV FSPHQDIISQ RIATLYRLPQ LSRGILVVPI ATALHRLAPK
RFLLGSSLVL DVGQKLDVEQ MRTRLEAAGY RCVDTVYEHG EFAVRGALID LFPMGSEVPY
RIDLFDDEIE TLRTFDPENQ RSVDKVESIR LLPAREFPLE KKAVSDFRGR FRERFDVDFR
RCPIYQDLSS GITPAGIEYY LPLFFEETGT LFDYLPGDTQ VFSLPGIEKA AEHFWTDARN
RYEDRRVDPE RPLLPPADIF LPVEDCFARL KNWPRVVVNQ DDIEPGVGQT RFEARALPDL
AIQAKAGEPL AALRRFIEEY QGRVLFCAES AGRREVLLEL LARLKLKPKE VDGWPAFVES
GERLNICIAP LDEGLLLDDL ALIAESPLFG QRVMQRRRRE KGRDGGDNVI KNLTELREGA
PVVHIDHGVG RYLGLVTMEF DGQAAEFLAL QYADEAKLYV PVASLHLIAR YSGSDDALAP
LHRLGSETWQ KAKRKAAEQV RDVAAELLDI YARRAAREGF AFQDPALDYA TFSAGFPFEE
TPDQQAAIDA VRADMLAGKP MDRLVCGDVG FGKTEVAMRA AFIAVHSGKQ VAVLVPTTLL
AQQHYNSFRD RFADWPVKVE VMSRFKSAKE VEGAVQQLAE GKVDIVIGTH KLLQDDVKFH
NLGLVIIDEE HRFGVRQKEQ LKALRSEVDI LTLTATPIPR TLNMAVAGMR DLSIIATPPA
RRLSVRTFVM EENKPTIKEA LLRELLRGGQ VYYLHNDVKT IDKCASELAE LVPEARIGVG
HGQMRERELE QVMSDFYHKR FNVLVASTII ETGIDVPSAN TIIIERADKF GLAQLHQLRG
RVGRSHHQAY AYLLTPPRKS MTDDAQKRLE AIAGAQDLGA GFILATHDLE IRGAGELLGD
GQSGQIQAVG FTLYMEMLER AVKAIQKGEQ PNLDQPLGGG PEINLRVPAL IPEDYLPDVH
ARLILYKRIA SATDEDGLKE LQVEMIDRFG LLPEPTKHLM RLTLLKLQAD KLGITKVDAG
PQGGRIEFAA ETCVDPLTLI KLIQAQPKRY KFEGATVFKI QVPMERAEER FNTLEALFER
LAPTT
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