Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1588 |
Symbol | |
ID | 5109246 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1751264 |
End bp | 1751971 |
Gene Length | 708 bp |
Protein Length | 235 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640502816 |
Product | TetR family transcriptional regulator |
Protein accession | YP_001187084 |
Protein GI | 146306619 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 0.472704 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTCAGT CGGAAACCGT TGAACGCATT CTCGATGCTG CGGAACAGCT GTTCGCGGAA AAAGGCTTCG CCGAAACCTC GTTGCGGCTG ATCACCAGCA AGGCCGGCGT CAATCTGGCT GCGGTCAACT ATCACTTCGG CTCGAAGAAG GCGCTGATCC AGGCGGTCTT CTCGCGCTTC CTCGGGCCCT TCTGCGCCAG TCTGGAAAAG GAACTCGACC GTCGTCAGGC CAAGACCGAC ACGCAGGCCA CCCTCGAAGA ACTCCTCGAA CTGCTGGTCG AGCAGGCGCT GGCGGTCAAG CCGCGTAGCG GCAACGACCT GTCCATCTTC ATGCGCCTGC TCGGCCTGGC GTTCAGTCAG AGCCAGGGGC ACCTGCGCAA GTATCTGGAG GAGGTGTACG GCAAGGTGTT CCGCCGCTAC ATGCTCCTCG TGCACGATGC CGCCCCGCGC ATTCCGCCGC TGGAACTGTT CTGGCGCGTG CATTTCATGC TCGGCGCCGC GGCGTTCAGC ATGTCCGGCA TCAAGGCCCT GCGCGCCATG GCCGAGACCG ATTTCGGCGT CAACACCTCG ATCGAGCAGG TGATGCGCAT GATGGTGCCT TTCCTGGCCG CCGGCATGCG CGCCGAAACC GGTGTCAACG ATCCCTCGCT GGCGGCCGCG CAACTCAAAC CGCGCAGCAA GGCGCCAAGC GCTCCGGCCA AGGTCTGA
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Protein sequence | MAQSETVERI LDAAEQLFAE KGFAETSLRL ITSKAGVNLA AVNYHFGSKK ALIQAVFSRF LGPFCASLEK ELDRRQAKTD TQATLEELLE LLVEQALAVK PRSGNDLSIF MRLLGLAFSQ SQGHLRKYLE EVYGKVFRRY MLLVHDAAPR IPPLELFWRV HFMLGAAAFS MSGIKALRAM AETDFGVNTS IEQVMRMMVP FLAAGMRAET GVNDPSLAAA QLKPRSKAPS APAKV
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