Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1587 |
Symbol | |
ID | 5109245 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 1750421 |
End bp | 1751035 |
Gene Length | 615 bp |
Protein Length | 204 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640502815 |
Product | LexA repressor |
Protein accession | YP_001187083 |
Protein GI | 146306618 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) |
TIGRFAM ID | [TIGR00498] SOS regulatory protein LexA |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 0.477026 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTGAAAC TGACGCCACG CCAAGCCGAG ATTCTCGCCT TCATCAAACG CTGCCTGGAA GACAACGGCT ATCCGCCCAC TCGGGCCGAA ATCGCCCAGG AGCTGGGTTT CAAATCGCCC AACGCGGCAG AGGAGCACCT CAAGGCGCTG GCGCGCAAAG GGGCCATCGA AATGACGCCC GGCGCCTCGC GCGGCATTCG CATCCCGGGC TTCGAGCCAG GTGCAGCCAA CGAGGACGAA GGCCTTCCAG TGATCGGACG CGTGGCCGCA GGGGCTCCCA TTCTCGCCCA GCAGCATGTC GAGGAATCCT GCCAGATCAA TCCTGCGTTC TTTCACCCCA AAGCCGACTA TCTGCTACGC GTGCGCGGCA TGAGCATGAA GGACATCGGC ATCTTCGACG GCGACCTGCT GGCCGTGCAC ACCACGCGCG AAGCGCGCAA CGGCCAGATC GTGGTCGCCC GCCTCGACGA CGAGGTCACG GTCAAGCGCT TCAAGCGCGA GGGCAACAAG GTCTGGCTGA TCGCCGAAAA CCCCGAGTTC GCCCCGATCG AAGTGGATCT GGAGCAGCAG GATCTGGTCA TCGAAGGTTT GAGTGTCGGT GTAATTCGCC GCTGA
|
Protein sequence | MLKLTPRQAE ILAFIKRCLE DNGYPPTRAE IAQELGFKSP NAAEEHLKAL ARKGAIEMTP GASRGIRIPG FEPGAANEDE GLPVIGRVAA GAPILAQQHV EESCQINPAF FHPKADYLLR VRGMSMKDIG IFDGDLLAVH TTREARNGQI VVARLDDEVT VKRFKREGNK VWLIAENPEF APIEVDLEQQ DLVIEGLSVG VIRR
|
| |