| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1583 |
|---|
| Symbol | |
|---|
| ID | 5109241 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 1746276 |
|---|
| End bp | 1748882 |
|---|
| Gene Length | 2607 bp |
|---|
| Protein Length | 868 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640502811 |
|---|
| Product | DNA topoisomerase I |
|---|
| Protein accession | YP_001187079 |
|---|
| Protein GI | 146306614 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
|---|
| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.590699 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAAT CGCTGGTCAT CGTGGAATCC CCGGCCAAGG CCAAGACCAT CAACAAGTAT
CTGGGCAGCC AGTACGTGGT GAAGTCGAGC ATCGGCCACA TCCGTGACCT GCCTACCAGC
GGCTCGGCAA GCGCCACCAA GGAGCCGGCC AAGCGCGGCA AGGCCGCCGC CGAGGCGCCT
GCGCTGTCGC CCAAGGAAAA GGCCAAACGT CAGCTGTTCG CGCGCATGGG CGTCGACCCC
GAGCACGGCT GGAAGGCCAA GTACGAGATC CTGCCCGGCA AGGAAAAGGT GATCGAAGAA
CTGCGCCGCC TGGCCAAGGA TGCCGACACC ATCTATCTCG CAACCGACTT GGACCGCGAG
GGGGAGGCCA TCGCATGGCA CCTGCGCGAA TCCATCGGTG GCGATGACGC CCGCTACAAG
CGTGTGGTGT TCAACGAGAT CACCAAGAAG GCGATCCAGG AAGCCTTCTC CAAGCCCGGC
GAGCTGGATA TCAACCGCGT CAACGCCCAG CAGGCGCGGC GCTTCCTCGA CCGCGTGGTG
GGCTACATGG TCTCGCCGCT GCTGTGGGCC AAGATCGCCC GCGGCCTGTC CGCCGGCCGC
GTGCAGTCGG TGGCGGTGAA GCTGGTGGTG GAGCGCGAGA AGGAAATCCG CGCCTTCGTC
CCGGAAGAAT ATTGGGAAGT GCACGCCGAT CTCGGCACCG CGAAGAACGC CAAGGTGCGT
TTCGAAGTGG TGCGCGAGGG CGGTGCGGCG TTCAAACCGG TCAATGAAGC ACAGGCCATG
GCCGCACTGG AGAAGCTCAA GGCCTCCAGC TACAGCGTGG TCAAGCGTGA AGACCGCCCG
ACCAGCAGCA AGCCGTCGGC TCCCTTCATT ACCTCCACCC TGCAGCAGGC GGCGAGCAAC
CGCCTGGGCT TCGGGGTGAA GAAGACCATG ATGATGGCCC AGCGTCTCTA CGAGGCTGGT
TACATCACCT ATATGCGTAC CGACTCGACC AACCTGTCGG CCGACGCGAT TGAAATGGTC
AGAGGCTTTA TCGGCAGCGA GTACGGCGAT AAGTACCTGC CGGGCAAGCC CAATCTGTAT
TCGAGCAAGG AAGGCGCTCA GGAGGCGCAC GAAGCGATTC GTCCGTCCGA CGTCAACCTG
CGTCCGACCC AGCTGTCGGG CATGGAGCGT GACGCCGAGC GTCTGTACGA CCTGATCTGG
CGCCAGTTCG TGGCCTGCCA GATGCCGCCG GCCGAGTACC TGTCCACCAG CGTCACCGTG
GCCGCCGGCG CCTTCGAGCT GCGTGCCAAG GGTCGTATCC TCAAGTTCGA CGGTTACACC
CGCGTGCTGC CGCAGCAGAG CAAGCCGGGC GAGGACGATG TCCTGCCGGA AATGAAGGAA
GGCGAGGGCC TCAAGCTGAT CCAGCTCGAC CCCAGCCAGC ACTTCACCAA GCCGCCGGCG
CGCTACTCCG AAGCCAGTCT GGTCAAGGAG CTGGAAAAGC GCGGCATCGG CCGCCCGTCC
ACTTATGCGG CGATCATTTC CACCATTCAG GATCGTGGCT ATGTGACGGT GCATAACCGC
CGCTTCTACG CCGAGAAGAT GGGCGATATC GTCACCGAGC GTCTCGACGA GAGCTTCGCC
AACCTGATGG ATTACGGCTT CACCGCCACC ATGGAAGAGC ATCTCGACGA TGTGGCCCAG
GGCGAGCGCG AGTGGAAGCA TCTGCTCGAC GAGTTCTACG GCGACTTCAA GAAGAAGCTC
GAAGCGGCCG AAGCGGGCGA GGGCGGCATG CGTGCCAACC AGCCGACCCT GACCGATATT
CCCTGCCGCG AATGCGGGCG GCCGATGATG ATTCGTACCG CTTCCACCGG TGTGTTCCTC
GGCTGTTCCG GCTATGCGCT GCCGCCGAAG GAGCGCTGCA AGGCCACCAT CAACCTGGTG
CCGGGCGACG AGATCGCCGC GGACGACGAG GGTGAGTCCG AGTCCCTGGT GCTGTTGGGC
AAGCATCGCT GCCCGATCTG CGCAACCGCC ATGGATGCCT ACCTGCTGGA TGAGAGCCGC
AAGCTGCACA TCTGCGGCAA CAACCCCGAT TGCAGTGGCT ACGAGATCGA GCAGGGCCAG
TACCGCATCA AGGGTTACGA AGGCCCGAGC CTGGAATGCG ACAAGTGCGG CAGCGAGATG
CAGCTCAAGA CCGGTCGCTT CGGCAAGTTC TTCGGTTGCA CCAATCCCAG CTGCAAGAAC
ACCCGCAAGC TGCTGAAGAA TGGCGAGGCT GCACCACCGA AGATGGACCC GGTGAAGATG
CCCGAACTCA AGTGCGAGAA GGTGGACGAC ACCTATGTGC TGCGTGACGG CGCTTCCGGC
CTGTTCCTGG CCGCCAGCGG TTTTCCGAAG AACCGCGAAA CTCGTGCGCC GCTGGTGCTG
GAGCTGATTC CGCACAAGCA CGAGATCGAC CCCAAGTACC ACTTCCTGCT CGAAGCGCCG
CAGAAGGATC CGGACGGTCG TCCGGCGGTA ATCCGCTACA GCCGCAAGAC CAAGGAGCAG
TACGTGCAGT CGGAGGTGGA CGGCAAGCCG ACTGGCTGGC GCGCCTTCTA CGATGGCGGC
AAGTGGAAGG TCGAGGACAA GCGCTAG
|
|---|
| Protein sequence | MGKSLVIVES PAKAKTINKY LGSQYVVKSS IGHIRDLPTS GSASATKEPA KRGKAAAEAP
ALSPKEKAKR QLFARMGVDP EHGWKAKYEI LPGKEKVIEE LRRLAKDADT IYLATDLDRE
GEAIAWHLRE SIGGDDARYK RVVFNEITKK AIQEAFSKPG ELDINRVNAQ QARRFLDRVV
GYMVSPLLWA KIARGLSAGR VQSVAVKLVV EREKEIRAFV PEEYWEVHAD LGTAKNAKVR
FEVVREGGAA FKPVNEAQAM AALEKLKASS YSVVKREDRP TSSKPSAPFI TSTLQQAASN
RLGFGVKKTM MMAQRLYEAG YITYMRTDST NLSADAIEMV RGFIGSEYGD KYLPGKPNLY
SSKEGAQEAH EAIRPSDVNL RPTQLSGMER DAERLYDLIW RQFVACQMPP AEYLSTSVTV
AAGAFELRAK GRILKFDGYT RVLPQQSKPG EDDVLPEMKE GEGLKLIQLD PSQHFTKPPA
RYSEASLVKE LEKRGIGRPS TYAAIISTIQ DRGYVTVHNR RFYAEKMGDI VTERLDESFA
NLMDYGFTAT MEEHLDDVAQ GEREWKHLLD EFYGDFKKKL EAAEAGEGGM RANQPTLTDI
PCRECGRPMM IRTASTGVFL GCSGYALPPK ERCKATINLV PGDEIAADDE GESESLVLLG
KHRCPICATA MDAYLLDESR KLHICGNNPD CSGYEIEQGQ YRIKGYEGPS LECDKCGSEM
QLKTGRFGKF FGCTNPSCKN TRKLLKNGEA APPKMDPVKM PELKCEKVDD TYVLRDGASG
LFLAASGFPK NRETRAPLVL ELIPHKHEID PKYHFLLEAP QKDPDGRPAV IRYSRKTKEQ
YVQSEVDGKP TGWRAFYDGG KWKVEDKR
|
|---|
| |