| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1581 |
|---|
| Symbol | fadA |
|---|
| ID | 5109239 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 1744680 |
|---|
| End bp | 1745855 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640502809 |
|---|
| Product | 3-ketoacyl-CoA thiolase |
|---|
| Protein accession | YP_001187077 |
|---|
| Protein GI | 146306612 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
|---|
| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases
[TIGR02445] fatty oxidation complex, beta subunit FadA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.353282 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTGA ATCCTAGAGA TGCAGTGATC GTCGACTTCG GTCGTACCCC GATGGGTCGT
TCCAAGGGCG GCATGCACCG CAACACCCGT GCCGAGACCA TGTCCGCGCA CCTGATCAGC
AAAGTGCTGG AGCGCAACGC CAAGATCGAC CCGGCAGAAG TCGAGGACGT GATCTGGGGC
TGCGTCAACC AGACCCTGGA GCAGGGCTGG AACATCGCGC GCATGGCGTC GCTGATGACC
CAGATCCCGC ACACCAGCGC CGGCCAGACC GTCAGCCGCC TGTGCGGTTC GTCCATGAGC
GCCCTGCACA CCGCCGTGCA GGCGATCCAG ACCGGCAACG GCGACGTGTT CGTCGTCGGC
GGTGTGGAGC ACATGGGCCA CGTCGGCATG ATGCACGGCG TCGACCCGAA CCCGCACCTG
TCCCTGTACG CCGCCAAGGC GTCCGGCATG ATGGGCCTGA CCGCCGAAAT GCTGGGCAAG
ATGCATGGCA TCAGCCGCGA GGCGCAGGAC GCCTTCGGTG AGCGTTCTCA CCGTCTGGCG
CACAAGGCCA CCGTCGAAGG CAAGTTCAAG GATGAAATCA TCCCGATGCA GGGCTACGAC
GAGAATGGTT TCCTGAAGGT CTTCGACTAC GACGAGACCA TTCGCCCGGA GACCACTCTG
GAGAGCCTGG CTACCCTGAA GCCGGCGTTC AACCCGAAAG GCGGCACCGT GACCGCGGGT
ACTTCCTCGC AGATCACCGA CGGCGCTTCC TGCATGATCG TCATGAGCGC CCAGCGCGCT
CAGGATCTGG GTATCCAGCC GATGGCCGTG GTTCGCGCCA TGGCCGTTGC CGGTGTCGAT
CCGGCGATCA TGGGCTACGG CCCGGTGCCG TCCACTCAGA AGGCGCTCAA GCGCGCCGGT
CTGACCATGG CCGACATCGA CTTCGTCGAG CTCAACGAAG CCTTCGCCGC CCAGGCCCTG
CCGGTGCTGA AGGATCTGAA GCTGCTCGAC AAGATGGAAG AGAAGGTCAA CCTGCACGGC
GGCGCCATCG CCCTGGGTCA CCCCTTCGGT TGTTCCGGTG CCCGTATCTC CGGTACCCTG
CTCAACGTCA TGAAGCAGAA CGGTGGCACC CTCGGTGTCT CCACCATGTG CGTGGGCCTT
GGCCAAGGCA TCACCACCGT CTTCGAGCGC GTTTAA
|
|---|
| Protein sequence | MSLNPRDAVI VDFGRTPMGR SKGGMHRNTR AETMSAHLIS KVLERNAKID PAEVEDVIWG
CVNQTLEQGW NIARMASLMT QIPHTSAGQT VSRLCGSSMS ALHTAVQAIQ TGNGDVFVVG
GVEHMGHVGM MHGVDPNPHL SLYAAKASGM MGLTAEMLGK MHGISREAQD AFGERSHRLA
HKATVEGKFK DEIIPMQGYD ENGFLKVFDY DETIRPETTL ESLATLKPAF NPKGGTVTAG
TSSQITDGAS CMIVMSAQRA QDLGIQPMAV VRAMAVAGVD PAIMGYGPVP STQKALKRAG
LTMADIDFVE LNEAFAAQAL PVLKDLKLLD KMEEKVNLHG GAIALGHPFG CSGARISGTL
LNVMKQNGGT LGVSTMCVGL GQGITTVFER V
|
|---|
| |