| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1580 |
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| Symbol | fadB |
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| ID | 5109238 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1742502 |
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| End bp | 1744649 |
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| Gene Length | 2148 bp |
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| Protein Length | 715 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640502808 |
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| Product | multifunctional fatty acid oxidation complex subunit alpha |
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| Protein accession | YP_001187076 |
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| Protein GI | 146306611 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
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| TIGRFAM ID | [TIGR02437] fatty oxidation complex, alpha subunit FadB |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.120976 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.369795 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTTACG AAGGTAAAGC CATCACGGTT AAGGCTCTTG AGAGCGGCAT CGTCGAATTG
AATTTCGACC TCAAGGGTGA GTCCGTCAAC AAATTCAACC GTCTTACCCT CAACGAGCTG
CGCGCCTCCG TCGACGCGAT CAAGGCCGAC GGTTCGATCA AGGGCGTGAT TGTCACCAGT
GGCAAGGACG TGTTCATCGT CGGTGCCGAT ATCACCGAAT TCGTCGACAA CTTCAAACTG
CCCGACGAAG AGCTGGTGGC TGGCAACCTG GAAGCCAACA AGATCTTCAG TGATTTCGAA
GACCTCGCCG TGCCCACCGT CGTCGCCATC AACGGCATCG CCCTGGGTGG CGGTTTCGAG
ATGTGCCTGG CCGGTGACTA CCGCGTAATG AGCGAGACCG CCAAGATCGG TCTGCCGGAA
GTCAAACTGG GCATCTACCC GGGCTTCGGC GGCACCGTGC GCCTGCCTCG CGTGATCGGC
ACCGACAACG CTGTCGAGTG GATCGCCTCC GGTAAGGAAA ACAAGGCTGC CGACGCCCTC
AAGGTAGGCG CCGTCGATGC CGTCGTCGCC CCCGCCAAGC TCAAGGAAGC CGCGCTGGAT
CTGGTCAAGC GCGCCATCTC CGGCGAGCTG GACTACAAGG CCAAGCGTCA GCCCAAGCTG
GAAAAGCTCA AGCTCAACGC CATCGAGCAG ATGATGTGCT TCGAGACCGC CAAGGGCTTC
GTTGCTGGCC AGGCCGGCCC GAACTACCCG GCTCCGGTCG AGGCGATCAA GACCATTCAG
AAAGCCGCCA ACTTCGGCCG CGACAAGGCG CTGGAAGTCG AGGCCGCCGG CTTCGTCAAA
CTGGCCAAGA CCTCGGTCGC CGAGAGCCTG ATCGGCCTGT TCCTCAACGA TCAGGAACTG
AAGAAGAAGG CCAAACACCA CGACGAAATC GCCCGCGACG TGAAACTGGC TGCCGTACTC
GGCGCCGGCA TCATGGGCGG CGGCATCGCC TACCAGTCGG CCTCCAAGGG CACCCCGATC
CTGATGAAGG ATATCCGCGA AGAGGGTATC CAGATGGGCC TGACCGAGGC CTCCAAGCTG
CTCGGCAAGC GCGTCGAGAA AGGTCGCATG ACCCCGGCGA AGATGGCTGA AGCCCTCAAT
GCCATCCGTC CGACCATGTC CTACGGTGAT TTCGGCAACG TCGACATCGT CGTCGAAGCC
GTGGTTGAGA ACCCCAAGGT CAAGCAGATC GTGCTGGCCG AAGTGGAAGA CGTGGTGCGC
GAAGACGCCA TCCTGGCCTC CAACACCTCG ACCATCTCCA TCTCCCTGCT GGCCCAGGCG
CTCAAGCGTC CGGAAAACTT CGTCGGCATG CACTTCTTCA ACCCGGTGCA CATGATGCCG
CTGGTGGAAG TCATTCGTGG CGAGAAGTCC AGCGAAGTGG CCGTGGCCAC CACCGTTGCC
TACGCCAAGA AGATGGGCAA GAACCCGATC GTGGTCAACG ACTGCCCCGG CTTCCTGGTC
AACCGCGTGC TGTTCCCGTA CTTCGGTGGC TTCTCCAAGC TGCTGGGCTT CGGTGTCGAC
TTCGTGCGCA TCGACAAGGT CATGGAGAAG TTCGGCTGGC CCATGGGCCC GGCCTACCTC
TCCGACGTGG TCGGCATCGA CACCGGCCAC CACGGCCGTG ACGTGATGGC CGAAGGCTTC
CCGGACCGCA TGGCGGTGGA AGGCAAGACC GCTGTCGACG TGATGTACGA AGCCAATCGC
CTGGGCCAGA AGAACGGCAA GGGCTTCTAC GCCTACGAGA CCGACAAGCG CGGCAAGCCG
AAGAAGGTCT CCGACCCTGA AGCTTACGAG CTGCTCAAGT CCATCGTGGT CGAAGAGCGT
GAAGTCACCG ACGAGGACAT CATCAACTTC ATGATGATCC CGCTGTGCCT GGAAACCGTT
CGTTGCCTGG AAGACGGCAT CGTCGATACC GCAGCCGAGG CCGATATGGG CCTGATCTAC
GGCATCGGCT TCCCTCCCTT CCGTGGCGGT GCGCTGCGCT ACATCGATTC CATCGGTGTC
GCCGAGTTCG TCGCCCTGGC CGACAAGTAC GCCGACCTGG GCGCGCTGTA CCACCCGACC
GCCAAGCTTC GCGAAATGGC CGCCAAGGGC CAGAAGTTCT TCGGTTAA
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| Protein sequence | MIYEGKAITV KALESGIVEL NFDLKGESVN KFNRLTLNEL RASVDAIKAD GSIKGVIVTS
GKDVFIVGAD ITEFVDNFKL PDEELVAGNL EANKIFSDFE DLAVPTVVAI NGIALGGGFE
MCLAGDYRVM SETAKIGLPE VKLGIYPGFG GTVRLPRVIG TDNAVEWIAS GKENKAADAL
KVGAVDAVVA PAKLKEAALD LVKRAISGEL DYKAKRQPKL EKLKLNAIEQ MMCFETAKGF
VAGQAGPNYP APVEAIKTIQ KAANFGRDKA LEVEAAGFVK LAKTSVAESL IGLFLNDQEL
KKKAKHHDEI ARDVKLAAVL GAGIMGGGIA YQSASKGTPI LMKDIREEGI QMGLTEASKL
LGKRVEKGRM TPAKMAEALN AIRPTMSYGD FGNVDIVVEA VVENPKVKQI VLAEVEDVVR
EDAILASNTS TISISLLAQA LKRPENFVGM HFFNPVHMMP LVEVIRGEKS SEVAVATTVA
YAKKMGKNPI VVNDCPGFLV NRVLFPYFGG FSKLLGFGVD FVRIDKVMEK FGWPMGPAYL
SDVVGIDTGH HGRDVMAEGF PDRMAVEGKT AVDVMYEANR LGQKNGKGFY AYETDKRGKP
KKVSDPEAYE LLKSIVVEER EVTDEDIINF MMIPLCLETV RCLEDGIVDT AAEADMGLIY
GIGFPPFRGG ALRYIDSIGV AEFVALADKY ADLGALYHPT AKLREMAAKG QKFFG
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