| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1575 |
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| Symbol | |
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| ID | 5109233 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1735673 |
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| End bp | 1737655 |
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| Gene Length | 1983 bp |
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| Protein Length | 660 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640502803 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_001187071 |
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| Protein GI | 146306606 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.642421 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACGAC ACGGAACGTG TTGCCCCTTA TCTCTGCTTG CCCCTGGAAA TGCCATGCGC
AGTCGTCTTC TTTCTGTAGT TTCCTGCCTG ATTCTCACCA CCGCTGGCCA GGCCAGCGCC
GAAGCGGCCA GCCTCACGCA ACAGCGCCAG TATTACGACG AAGCCAAGAG CGCGCTGGCC
AAGGGCGACA GTGGCCCCTA TCGCCGTTAT CAGACGGCAT TGCGCGACTA TCCGCTGACG
CCCTACCTGG CTTACGACGA GCTGACCAAC CGACTCAAGT CGGCGAGCAA TGCCGAGATC
GAGAAGTTCC TCGCCGAACA TGGCGACCTG CCCCAGGCCA GCTGGATGAA ACTGCGCTGG
CTGCGCTGGC TGGCCGAGCG CGGTGACTGG AAGCCGTTCC TCGACCATTA CGACCCCGCC
CTCAACTTCA CCGAGCTGGA CTGCCTCTAT GGGCAGTACC AGCTGAGCCA CGGCCTGACC
GCCGAGGGCA ATGCCACGGC GGAAAAGCTC TGGCTGGTGG GCAAGTCGCA GCCCAACGCC
TGCGACCCGC TGTTCGCGCG CTGGGCCGCC AGCGGCCAGC TCACCGAACA ACGGCGCTGG
CAACGCGCCA AGCTGGCCGT GGAGGCCGGC AACTATGGCC TGGCCAATCA CCTGATCAAG
AACATGCCGA CCCTCGGCGA GCGCGGCAAA TTGCTGGTGG AAGTGGCGCA GAAGCCCCAA
CTGCTCAAGC AGACCGCACG TTTCGCAGCC ACTGACGAAG CCATGGGTGA CGTGGTCGGC
CTCGGCCTGC GTCGCCTGGC GCGGCAGAGC CCGGAGGATG CCCTGGGCCT GCTCGACACC
TATGCCCAGC GCATGAAGTT CTCCCGGGAC GAACAAGTGG CCATCGCCCG GCAGATCGGC
CTGACCCTGG CCAAACGTTT CGACATGCGC GGCCTGCAGG TCATGGCCAA GTATGACCCC
GAGCTGCGCG ACAATACCGT CAGCGAATGG CGCGCCCGCC TGCTGTTGCG CCATGGCCGC
TGGGACGAAG CCTACCAGCT GACCCAGCGC ATGCCGGCCG ATCTGGCCAG CAGCAACCGC
TGGCGCTACT GGAATGCGCG CAGCCTGCAA CTGGCGCAGC CCAACAGCCA GCAGCCGATC
GCCCTCTACC AGTCCCTGGC CAAGGAGCGC GACTTCTACG GCTTCATGGC CGCCGATCAG
GTCAAGGCGC CCTACCAGCT CAACAACCAG CCGCTGGCGC TGGACCCCAA GGTGGTGCAG
AAGGTGCGCA ACACCGCCGG CATTCGCCGC GCCATGGAGT TCCATGCGCG CGGGCAGATC
GTCGACGGGC GTCGCGAGTG GTATCACGTC AGCCGCCTGT TCAGCCGTGA CGAGCTGGTG
GCCCAGGCCC GCCTGGCCTA CGAGATGGAA TGGTATTTCC CGGCCATCCG CACCATCAGC
CAGGCGCAAT ACTGGGATGA CCTGGAAGTG CGCTTCCCGA TGGCCCACCG CGACCAACTG
GTTCGCGAAG CCAAGCGTCG CGACCTGCAC TCGAGCTGGG TGTTCGCCAT CACCCGCCAG
GAAAGCGCCT TCATGGCCGA TGCCCGCTCC CACGCCGGCG CCATGGGTCT GATGCAGCTG
ATGCCGGCCA CCGCCAAGGA AACCGCACGC AAGTTCGGCA TTCCTCTGGC CTCACCGCAG
CACGTGCTCA ACCCGGACAC CAACATCCAG CTGGGCGCGG CCTACCTGAG CCAGGTGTAT
GGGCAGTTCA ACGGCAACCG TATTCTCGCC TCGGCGGCCT ACAACGCCGG CCCGGGGCGC
GTGCGCCAGT GGCTGCGCGG CGCCGATCAC CTGAGCTATG ACGTCTGGGT GGAGAACATT
CCGTTCGACG AAACCCGTCA GTACGTGCAG AACGTGCTGT CCTACTCGGT GATCTACGGG
CAGAAACTGG GCGCCCCCCA CCCGCTGGTG GCCTGGAACG AGCGTTACTT CGACGCCCAA
TAA
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| Protein sequence | MQRHGTCCPL SLLAPGNAMR SRLLSVVSCL ILTTAGQASA EAASLTQQRQ YYDEAKSALA
KGDSGPYRRY QTALRDYPLT PYLAYDELTN RLKSASNAEI EKFLAEHGDL PQASWMKLRW
LRWLAERGDW KPFLDHYDPA LNFTELDCLY GQYQLSHGLT AEGNATAEKL WLVGKSQPNA
CDPLFARWAA SGQLTEQRRW QRAKLAVEAG NYGLANHLIK NMPTLGERGK LLVEVAQKPQ
LLKQTARFAA TDEAMGDVVG LGLRRLARQS PEDALGLLDT YAQRMKFSRD EQVAIARQIG
LTLAKRFDMR GLQVMAKYDP ELRDNTVSEW RARLLLRHGR WDEAYQLTQR MPADLASSNR
WRYWNARSLQ LAQPNSQQPI ALYQSLAKER DFYGFMAADQ VKAPYQLNNQ PLALDPKVVQ
KVRNTAGIRR AMEFHARGQI VDGRREWYHV SRLFSRDELV AQARLAYEME WYFPAIRTIS
QAQYWDDLEV RFPMAHRDQL VREAKRRDLH SSWVFAITRQ ESAFMADARS HAGAMGLMQL
MPATAKETAR KFGIPLASPQ HVLNPDTNIQ LGAAYLSQVY GQFNGNRILA SAAYNAGPGR
VRQWLRGADH LSYDVWVENI PFDETRQYVQ NVLSYSVIYG QKLGAPHPLV AWNERYFDAQ
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