Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1495 |
Symbol | |
ID | 5108446 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1654172 |
End bp | 1655860 |
Gene Length | 1689 bp |
Protein Length | 562 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640502724 |
Product | long-chain-fatty-acid--CoA ligase |
Protein accession | YP_001186992 |
Protein GI | 146306527 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.246606 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACCTG ATTTCTGGAA CGATAAACGC GCGCCCGGTG TACCCAACGA GATCGACCTG TCCAGCTACA AGTCGGTGAT CGAGGTGTTC GAGCGTTCGT GCAAGCGTTT CGCCGACCGC CCGGCGTTCA GCAACCTGGG TGTAACCCTG AGCTACGCCG AGCTGGATCG CCTCTCGGCG GCCTTCGCGG CCTATCTGCA GAAGCACACC GACCTCAAGC CGGGCGACCG TATCGCGGTA CAGATGCCCA ACGTGCTGCA GTATCCCATC GCCGTGTTCG GCGCCATGCG CGCCGGGCTG ATCGTGGTCA ACACCAACCC GCTGTACACC GCCCGCGAGA TGCGTCACCA GTTCAAGGAC GCTGGTGTGC GTGCACTGGT GTACCTGAAC ATGTTCGGCA AGCTGGTGCA GGAGGTACTG CCGGATACCG AGATTGAGTA CCTGATCGAA GCCAAGATGG GCGACATGCT GCCCAGTCTC AAGGGCTGGC TGGTCAACAC CGTGGTGAAG AAGGTCAAGA AGATGGTGCC CGACTACCAT CTGCCCCAGG CCATCGCCTT CAAGCAGGTG CTCAAGCAGG GCCATGGCCA GGCGCTGACG CCGGTCAAGG CCAGTCACGA CGATATCGCC GTGCTGCAGT ACACCGGCGG CACCACCGGT GTGGCCAAGG GCGCCATGCT GACTCACGGC AACCTGGTGG CCAACATGCT GCAGGTCGAC GCCTGCCTGG CGCAGCTCGG TGACGACGGC AAGCCGCTGA TGAAGCAGGG CCAGGAGATC ATGATCGCGC CGCTGCCGCT GTACCACATC TATGCCTTCA CCGCGAACTG CATGTGCATG ATGGTCAACG GCAACCACAA CGTGTTGATC ACCAATCCGC GCGACATTCC GGGTTTCGTC AAGGAACTGG GCAAGTGGAA GTTCTCCGCG CTGCTGGGTT TGAACACCCT GTTCGTCGCG CTGATGGATC ATCCGGAGTT CAAGAATCTC GATTTCTCCA ATCTCAAGGT GACCAACTCC GGCGGCACCG CCCTGGTCAA GGCCACCGCC GAGCGCTGGC AGCAGATGAC CGGTTGCACC GTGGTGGAAG GCTACGGCCT GACCGAAACC TCGCCGGTGG CCAGCACCAA CCCCTACGGC AACAGGGCGC GCCTGGGCAC CGTGGGCATT CCGGTGCCGA GCACGGCGTT CAAGGTGATC GACGACGATG GCAACGAGCT GCCGCTGGGC GAGCGGGGCG AGCTGTGCAT CAAGGGGCCG CAGGTGATGA AGGGCTACTG GCAGCGTCCG GAGGCCACCG CTGAGGTGCT CGACGCCGAG GGCTGGTTCA AGACCGGCGA CATCGCGGTG ATCGACCCCG ACGGCTTCGT GCGTATCGTC GATCGCAAGA AGGACATGAT CATCGTCTCC GGCTTCAACG TGTACCCGAA CGAGATCGAG GACGTGGTCA TGGCCCACCC GAAAGTCGCC AGCTGCGCGG CCATCGGCGT GCCGGACGAG AAATCCGGCG AGGTGGTCAA GCTGTTTGTG GTACCGCGTG ACGGCGGCGT GACCATTGAA GAGCTCAAGG CCTACTGCAA GGAGAACTTC ACCGGCTACA AGGTTCCCAA GCACATCGTC CTGAAGGACG CCTTGCCGAT GACCCCGGTC GGCAAGATCC TGCGCCGCGA GCTGCGCGAC ATCGCCTGA
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Protein sequence | MQPDFWNDKR APGVPNEIDL SSYKSVIEVF ERSCKRFADR PAFSNLGVTL SYAELDRLSA AFAAYLQKHT DLKPGDRIAV QMPNVLQYPI AVFGAMRAGL IVVNTNPLYT AREMRHQFKD AGVRALVYLN MFGKLVQEVL PDTEIEYLIE AKMGDMLPSL KGWLVNTVVK KVKKMVPDYH LPQAIAFKQV LKQGHGQALT PVKASHDDIA VLQYTGGTTG VAKGAMLTHG NLVANMLQVD ACLAQLGDDG KPLMKQGQEI MIAPLPLYHI YAFTANCMCM MVNGNHNVLI TNPRDIPGFV KELGKWKFSA LLGLNTLFVA LMDHPEFKNL DFSNLKVTNS GGTALVKATA ERWQQMTGCT VVEGYGLTET SPVASTNPYG NRARLGTVGI PVPSTAFKVI DDDGNELPLG ERGELCIKGP QVMKGYWQRP EATAEVLDAE GWFKTGDIAV IDPDGFVRIV DRKKDMIIVS GFNVYPNEIE DVVMAHPKVA SCAAIGVPDE KSGEVVKLFV VPRDGGVTIE ELKAYCKENF TGYKVPKHIV LKDALPMTPV GKILRRELRD IA
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