Gene Pmen_1495 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1495 
Symbol 
ID5108446 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1654172 
End bp1655860 
Gene Length1689 bp 
Protein Length562 aa 
Translation table11 
GC content63% 
IMG OID640502724 
Productlong-chain-fatty-acid--CoA ligase 
Protein accessionYP_001186992 
Protein GI146306527 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.246606 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACCTG ATTTCTGGAA CGATAAACGC GCGCCCGGTG TACCCAACGA GATCGACCTG 
TCCAGCTACA AGTCGGTGAT CGAGGTGTTC GAGCGTTCGT GCAAGCGTTT CGCCGACCGC
CCGGCGTTCA GCAACCTGGG TGTAACCCTG AGCTACGCCG AGCTGGATCG CCTCTCGGCG
GCCTTCGCGG CCTATCTGCA GAAGCACACC GACCTCAAGC CGGGCGACCG TATCGCGGTA
CAGATGCCCA ACGTGCTGCA GTATCCCATC GCCGTGTTCG GCGCCATGCG CGCCGGGCTG
ATCGTGGTCA ACACCAACCC GCTGTACACC GCCCGCGAGA TGCGTCACCA GTTCAAGGAC
GCTGGTGTGC GTGCACTGGT GTACCTGAAC ATGTTCGGCA AGCTGGTGCA GGAGGTACTG
CCGGATACCG AGATTGAGTA CCTGATCGAA GCCAAGATGG GCGACATGCT GCCCAGTCTC
AAGGGCTGGC TGGTCAACAC CGTGGTGAAG AAGGTCAAGA AGATGGTGCC CGACTACCAT
CTGCCCCAGG CCATCGCCTT CAAGCAGGTG CTCAAGCAGG GCCATGGCCA GGCGCTGACG
CCGGTCAAGG CCAGTCACGA CGATATCGCC GTGCTGCAGT ACACCGGCGG CACCACCGGT
GTGGCCAAGG GCGCCATGCT GACTCACGGC AACCTGGTGG CCAACATGCT GCAGGTCGAC
GCCTGCCTGG CGCAGCTCGG TGACGACGGC AAGCCGCTGA TGAAGCAGGG CCAGGAGATC
ATGATCGCGC CGCTGCCGCT GTACCACATC TATGCCTTCA CCGCGAACTG CATGTGCATG
ATGGTCAACG GCAACCACAA CGTGTTGATC ACCAATCCGC GCGACATTCC GGGTTTCGTC
AAGGAACTGG GCAAGTGGAA GTTCTCCGCG CTGCTGGGTT TGAACACCCT GTTCGTCGCG
CTGATGGATC ATCCGGAGTT CAAGAATCTC GATTTCTCCA ATCTCAAGGT GACCAACTCC
GGCGGCACCG CCCTGGTCAA GGCCACCGCC GAGCGCTGGC AGCAGATGAC CGGTTGCACC
GTGGTGGAAG GCTACGGCCT GACCGAAACC TCGCCGGTGG CCAGCACCAA CCCCTACGGC
AACAGGGCGC GCCTGGGCAC CGTGGGCATT CCGGTGCCGA GCACGGCGTT CAAGGTGATC
GACGACGATG GCAACGAGCT GCCGCTGGGC GAGCGGGGCG AGCTGTGCAT CAAGGGGCCG
CAGGTGATGA AGGGCTACTG GCAGCGTCCG GAGGCCACCG CTGAGGTGCT CGACGCCGAG
GGCTGGTTCA AGACCGGCGA CATCGCGGTG ATCGACCCCG ACGGCTTCGT GCGTATCGTC
GATCGCAAGA AGGACATGAT CATCGTCTCC GGCTTCAACG TGTACCCGAA CGAGATCGAG
GACGTGGTCA TGGCCCACCC GAAAGTCGCC AGCTGCGCGG CCATCGGCGT GCCGGACGAG
AAATCCGGCG AGGTGGTCAA GCTGTTTGTG GTACCGCGTG ACGGCGGCGT GACCATTGAA
GAGCTCAAGG CCTACTGCAA GGAGAACTTC ACCGGCTACA AGGTTCCCAA GCACATCGTC
CTGAAGGACG CCTTGCCGAT GACCCCGGTC GGCAAGATCC TGCGCCGCGA GCTGCGCGAC
ATCGCCTGA
 
Protein sequence
MQPDFWNDKR APGVPNEIDL SSYKSVIEVF ERSCKRFADR PAFSNLGVTL SYAELDRLSA 
AFAAYLQKHT DLKPGDRIAV QMPNVLQYPI AVFGAMRAGL IVVNTNPLYT AREMRHQFKD
AGVRALVYLN MFGKLVQEVL PDTEIEYLIE AKMGDMLPSL KGWLVNTVVK KVKKMVPDYH
LPQAIAFKQV LKQGHGQALT PVKASHDDIA VLQYTGGTTG VAKGAMLTHG NLVANMLQVD
ACLAQLGDDG KPLMKQGQEI MIAPLPLYHI YAFTANCMCM MVNGNHNVLI TNPRDIPGFV
KELGKWKFSA LLGLNTLFVA LMDHPEFKNL DFSNLKVTNS GGTALVKATA ERWQQMTGCT
VVEGYGLTET SPVASTNPYG NRARLGTVGI PVPSTAFKVI DDDGNELPLG ERGELCIKGP
QVMKGYWQRP EATAEVLDAE GWFKTGDIAV IDPDGFVRIV DRKKDMIIVS GFNVYPNEIE
DVVMAHPKVA SCAAIGVPDE KSGEVVKLFV VPRDGGVTIE ELKAYCKENF TGYKVPKHIV
LKDALPMTPV GKILRRELRD IA