| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1492 |
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| Symbol | |
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| ID | 5108443 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1651487 |
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| End bp | 1652341 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640502721 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001186989 |
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| Protein GI | 146306524 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.1063 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTTTCA CCCTGCGTGT CGGCATTACC CTGAGCCTGG TGGCGGTGGC CGTGCTGGCC
GGCGCCTGGT TATGGCAGCA CTACCTGTAT TCGCCGTGGA CGCGCGACGC GCGGGTGCGC
GCCGATGTGG TGACCATCGC CCCCGATCTG GCCGGCTGGG TACGCGAGCT GAAGGTGCGC
GACAACCAGC ATGTGGCGGC GGACGAGTTG CTGATGAGTC TGGATCGCGA GCGTTACCAG
GTCGCCCTCG AACAGGCGCA GGCCGTGGCC GAGACCCGCC GCCAGCAGTT GCTGCTGCGC
GAGCACGAGG CTGGCCGTCG TATGCGCCTG GGGCCGCAGG CGATCAGCGC CGAACTGCGC
GACAACGCCC AGATCAGCGC CGAGATCGCC CGCGGCGAGT ATCGCCAGGC GCAGGTGGCG
GTCAGGTCCG CCGAACTGGA CCTGGCGCGC AGCGAAGTGC GGGCGCCACG CGCCGGGCAG
GTGACCAACC TGCGCCTGGC CGAAGGCAAC TACGTGCGAG CCGGCGAGCC GGTGCTGGCC
CTGGTGGACG AGTCGTCCTT CTATGTGCAG GCCTATTTCG AGGAAATCAA ACTGCCGCGC
ATCCGCATCG GCGCGCCAGT GGAAATCTGG TTGATGAGTG GCGATCAGCC GCTGCGCGGC
GAGGTGGAGA GCATCAGTCG CGGCATCGCC GACCGCAATG CCAGCCCGGA TGGACAGCTG
CTGGCCGATG TCGAACCGAC CTTCAACTGG GTGCGCCTGG CGCAGCGCAT TCCGGTGCGG
ATCAAGCTCG ATGAGGTGCC TGAAGGCGTG GTGCTGAGCG CGGGCATGAC CGCCAGCGTA
CGGGTGATAG AGTAA
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| Protein sequence | MRFTLRVGIT LSLVAVAVLA GAWLWQHYLY SPWTRDARVR ADVVTIAPDL AGWVRELKVR
DNQHVAADEL LMSLDRERYQ VALEQAQAVA ETRRQQLLLR EHEAGRRMRL GPQAISAELR
DNAQISAEIA RGEYRQAQVA VRSAELDLAR SEVRAPRAGQ VTNLRLAEGN YVRAGEPVLA
LVDESSFYVQ AYFEEIKLPR IRIGAPVEIW LMSGDQPLRG EVESISRGIA DRNASPDGQL
LADVEPTFNW VRLAQRIPVR IKLDEVPEGV VLSAGMTASV RVIE
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