Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1471 |
Symbol | |
ID | 5109760 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1631570 |
End bp | 1632994 |
Gene Length | 1425 bp |
Protein Length | 474 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640502700 |
Product | protease Do |
Protein accession | YP_001186968 |
Protein GI | 146306503 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAAATC TCAAATCCGT AACGCCGCTG CTGATGGCAG CGCTGCTCTG GGGGCAGAGT CTGCTGGCCC AGGCCAGCCT GCCGGACTTT ACCGCTCTGG TTGAGGAGGC CTCGCCTGCG GTGGTCAACA TCAGTACTCG TCAGAAAATG CCGGAGCGCT CCGTGGCTGC TCAGCCCGGG CTGCCCGATC TGGAAGGCCT GCCGCCAATG TTCCGCGAGT TCTTCGAGCG CAGCATTCCG CAGATGCCGC GCAATCCGGG CGGTCGTCAG CGTGAAGCGC AGTCGCTGGG TTCCGGCTTC ATCATCTCCG CCGATGGTTA CGTGCTGACC AACAATCATG TGGTGGCCGA TGCCGATGAG ATCATCGTGC GCCTGTCTGA CCGCAGCGAG CTGGAGGCCA AGCTGATCGG CGCCGATCCG CGCAGCGACG TGGCACTGCT CAAGGTCGAG GGCAAGGGGC TGCCCACCGT GCGTCTGGGC AAGTCCGACG AACTCAAGGT CGGCGAATGG GTACTGGCCA TCGGCTCGCC TTTCGGTTTC GATCATTCGG TGACCGCCGG TATCGTCAGC GCCAAGGGGC GCAACCTGCC GAGCGACAGC TACGTGCCCT TCATCCAGAC CGATGTGGCG ATCAACCCCG GCAACTCCGG CGGGCCACTG TTCAACCTCA AGGGCGAGGT GGTCGGCATC AACTCGCAGA TCTTCACCCG CTCGGGCGGC TTCATGGGCC TGTCCTTCGC CATCCCGATG GAAGTGGCCC TGCAGGTTTC CGAACAGCTC AAGGCCGACG GCAAGGTCAC TCGCGGCTGG CTCGGCGTGG TCATCCAGGA AGTGAACAAG GACCTGGCCG AGTCCTTCGG CCTGGATCGC CCGGCTGGTG CCCTGGTGGC GCAGGTGCTG GAAGATGGTC CGGCGGACAA GGGCGGTCTG CAGGTTGGCG ACGTGATTCT CAGTCTCAAC GGCAAGCCGA TCGTCATGTC GGCGGATTTG CCGCATCTGG TCGGTGGCCT CAAGCCGGGC GAGAAGGCCG AGATGGACGT GGTGCGTGAC GGCTCGCGCA AGAAGCTCAA GGTGACCATT GGCACCTTGC CGGAAGAAGG TCAGGAACTG GCTGCTGCCG GTTCGACCAA GGGGGGCGAG CGCAGCAGCA ACCGCCTGGG TGTGACGGTG GTCGAGCTGA CCGCCGAGCA GAAGAAGGGC CTGGACCTGC GCGGTGGCGT GGTGGTCAAG GAAGTGCTCA GCGGTCCGGC GGCCATGATC GGTCTGCGAC CGGGCGATGT GATCACGCAC CTGAACAACC AGGCCATCGA TTCGACGGCC ACCTTCGCCA AGGTGGCGCA GGAGCTGCCG AAGAACCGTT CGGTGTCGAT GCGCGTGCTG CGTCAGGGGC GCGCCAGCTT CATCACCTTC AAACTGGCCG AGTAA
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Protein sequence | MRNLKSVTPL LMAALLWGQS LLAQASLPDF TALVEEASPA VVNISTRQKM PERSVAAQPG LPDLEGLPPM FREFFERSIP QMPRNPGGRQ REAQSLGSGF IISADGYVLT NNHVVADADE IIVRLSDRSE LEAKLIGADP RSDVALLKVE GKGLPTVRLG KSDELKVGEW VLAIGSPFGF DHSVTAGIVS AKGRNLPSDS YVPFIQTDVA INPGNSGGPL FNLKGEVVGI NSQIFTRSGG FMGLSFAIPM EVALQVSEQL KADGKVTRGW LGVVIQEVNK DLAESFGLDR PAGALVAQVL EDGPADKGGL QVGDVILSLN GKPIVMSADL PHLVGGLKPG EKAEMDVVRD GSRKKLKVTI GTLPEEGQEL AAAGSTKGGE RSSNRLGVTV VELTAEQKKG LDLRGGVVVK EVLSGPAAMI GLRPGDVITH LNNQAIDSTA TFAKVAQELP KNRSVSMRVL RQGRASFITF KLAE
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