| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1467 |
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| Symbol | algU |
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| ID | 5109756 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1628939 |
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| End bp | 1629520 |
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| Gene Length | 582 bp |
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| Protein Length | 193 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640502696 |
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| Product | RNA polymerase sigma factor AlgU |
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| Protein accession | YP_001186964 |
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| Protein GI | 146306499 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.000401501 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTAACCC AGGAAGATGA TCAGCAACTG GTCGAGCGAG TGCAGCGTGG TGACAAGCGT
GCCTTCGATC TGTTGGTGCT GAAGTATCAG CACAAGATCC TCGGGTTGAT CGTGCGATTC
GTGCACGACA CCCACGAGGC TCAGGATGTC GCCCAAGAGG CTTTTGTAAA AGCCTATCGG
GCGCTTGGAA ACTTTCGCGG TGACAGCGCG TTCTATACCT GGCTGTACCG CATCGCCATC
AACACGGCGA AGAATTATCT GGTGTCTCGC GGACGTCGAC CGCCAGATAG TGATGTCAGT
AGCGATGACG CGGAGTTCTA CGATGGCGAC CACGCCCTCA AGGACATCGA GTCACCGGAA
CGGGCATTGC TGCGCGACGA GATCGAGGCC ACCGTGCATC GAACCATCGC CCAGCTACCG
GATGATTTGC GTACGGCACT GACTTTGCGC GAGTTCGAAG GTCTTAGTTA TGAGGACATC
GCCAGCGTCA TGCAGTGTCC GGTAGGTACG GTGCGTTCGC GGATTTTCCG TGCACGCGAG
GCAATTGATA AGTCCCTGCA ACCCCTGTTG CAGGAAGCCT AA
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| Protein sequence | MLTQEDDQQL VERVQRGDKR AFDLLVLKYQ HKILGLIVRF VHDTHEAQDV AQEAFVKAYR
ALGNFRGDSA FYTWLYRIAI NTAKNYLVSR GRRPPDSDVS SDDAEFYDGD HALKDIESPE
RALLRDEIEA TVHRTIAQLP DDLRTALTLR EFEGLSYEDI ASVMQCPVGT VRSRIFRARE
AIDKSLQPLL QEA
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