Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1466 |
Symbol | |
ID | 5109755 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 1626930 |
End bp | 1628561 |
Gene Length | 1632 bp |
Protein Length | 543 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640502695 |
Product | L-aspartate oxidase |
Protein accession | YP_001186963 |
Protein GI | 146306498 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0029] Aspartate oxidase |
TIGRFAM ID | [TIGR00551] L-aspartate oxidase |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00248368 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTCATC ATTTCCAGCA CGACGTTCTG GTCATCGGCA GCGGCGCTGC CGGCCTGACC CTCGCCCTTA CCCTGCCTCC CAGCCTGCGC GTCGCGGTGC TGAGCAAGGG CAGCCTGGCC AACGGTTCGA CCTATTGGGC CCAGGGCGGT GTAGCGGCAG TACTCGACGA CACCGACACG GTGGAATCCC ACGTCGCCGA CACCCTCAAC GCGGGTGCCG GTCTGTGCCG TGCCGATGCC GTGCGCTTTA CCGTGGAGCA TAGCCGCGAA GCCATCCAGT GGCTGATCGA TCAGGGCGTA CCCTTCACCC GCGAGGCGGA AACCGCCCGC GAGGACGGCG GCTTCGAATT TCATCTGACC CGCGAAGGGG GCCACAGCCA CCGCCGTATC ATCCATGCGG CCGATGCCAC CGGCGCGGCG ATCTTCAATA CCCTGCTGGA GCAGGCACGG CAGCGTCCCA ACATCGAGCT GCTGGAGCAG CGTGTGGCGG TCGACCTGAT CACCGAGCGC AAGCTCGGCC TGGATGGCGA GCGCTGCCTG GGCGCCTATG TGCTGGATCG CGAGAAGGGC GAAGTGGACA CCTTCGCCGC GCGTTTCGTG ATACTCGCCA CCGGCGGCGC CGCCAAGGTC TACCTCTATA CCAGCAACCC CGATGGCGCC TGCGGCGACG GCATCGCCAT GGCCTGGCGC GCCGGTTGCC GGGTAGGCAA CCTGGAATTC AACCAGTTCC ATCCCACCTG CCTGTATCAC CCGCAAGCCA AGAGCTTTCT GGTCACCGAA GCCGTGCGTG GCGAAGGCGG GCTGCTCAAG CTGCCCAACG GCGAGCGCTT CATGCCGCGC TTCGACGAAC GCGCCGAGCT GGCGCCGCGC GATATCGTCG CGCGCGCCAT CGACCATGAG ATGAAGCGCC TGGGGATAGA CTGCGTGTAC CTGGACATCA GCCACAAGCC GGCCGAGTTC ATCACCAGCC ACTTCCCCAC CGTCTATGAG CGCTGCCTGA GTTTCGGCAT CGACATCACC AAGCAGCCCA TCCCGGTGGT GCCGGCCGCG CATTACACCT GCGGCGGGGT GGTCGTCGAC CAGTACGGCC GTACCGACGT GCCGGGCCTG TATGCCATCG GCGAAACCAG CTTCACCGGT CTGCACGGCG CCAACCGCAT GGCCAGCAAC TCCTTGCTGG AGTGCTTCGT GTACGCCCGC TCGGCCTGTG CCGACATCGT CGCCCAGCTC GATGCAGTGG ACATGCCGAC CAACCTGCCC TGCTGGGACG CCAGCCAGGT GACCGACTCC GACGAAGACG TGATCATCGC GCACAACTGG GACGAGCTGC GGCGCTTCAT GTGGGACTAC GTGGGCATCG TGCGCACCAA CAAGCGCCTG CAGCGCGCCC AGCACCGCGT ACGCCTGCTG CTGGACGAGA TCGATGAGTT CTACAGCAAC TACAAGGTCA GTCGCGACCT GATCGAGCTG CGCAACCTGG CGCTGGTCGC CGAGCTGATG ATCCGCTCGG CCATGCAGCG CCATGAAAGC CGCGGCCTGC ACTACACCCT CGATTACCCC GAGCAGTTGG CCGAAGCCCA GGACACTATT CTGGTGCCGA CACCCCAGGC TCAGCCCAGC GTCGCCTGCT GA
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Protein sequence | MSHHFQHDVL VIGSGAAGLT LALTLPPSLR VAVLSKGSLA NGSTYWAQGG VAAVLDDTDT VESHVADTLN AGAGLCRADA VRFTVEHSRE AIQWLIDQGV PFTREAETAR EDGGFEFHLT REGGHSHRRI IHAADATGAA IFNTLLEQAR QRPNIELLEQ RVAVDLITER KLGLDGERCL GAYVLDREKG EVDTFAARFV ILATGGAAKV YLYTSNPDGA CGDGIAMAWR AGCRVGNLEF NQFHPTCLYH PQAKSFLVTE AVRGEGGLLK LPNGERFMPR FDERAELAPR DIVARAIDHE MKRLGIDCVY LDISHKPAEF ITSHFPTVYE RCLSFGIDIT KQPIPVVPAA HYTCGGVVVD QYGRTDVPGL YAIGETSFTG LHGANRMASN SLLECFVYAR SACADIVAQL DAVDMPTNLP CWDASQVTDS DEDVIIAHNW DELRRFMWDY VGIVRTNKRL QRAQHRVRLL LDEIDEFYSN YKVSRDLIEL RNLALVAELM IRSAMQRHES RGLHYTLDYP EQLAEAQDTI LVPTPQAQPS VAC
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