Gene Pmen_1466 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1466 
Symbol 
ID5109755 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1626930 
End bp1628561 
Gene Length1632 bp 
Protein Length543 aa 
Translation table11 
GC content66% 
IMG OID640502695 
ProductL-aspartate oxidase 
Protein accessionYP_001186963 
Protein GI146306498 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0029] Aspartate oxidase 
TIGRFAM ID[TIGR00551] L-aspartate oxidase 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.00248368 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCATC ATTTCCAGCA CGACGTTCTG GTCATCGGCA GCGGCGCTGC CGGCCTGACC 
CTCGCCCTTA CCCTGCCTCC CAGCCTGCGC GTCGCGGTGC TGAGCAAGGG CAGCCTGGCC
AACGGTTCGA CCTATTGGGC CCAGGGCGGT GTAGCGGCAG TACTCGACGA CACCGACACG
GTGGAATCCC ACGTCGCCGA CACCCTCAAC GCGGGTGCCG GTCTGTGCCG TGCCGATGCC
GTGCGCTTTA CCGTGGAGCA TAGCCGCGAA GCCATCCAGT GGCTGATCGA TCAGGGCGTA
CCCTTCACCC GCGAGGCGGA AACCGCCCGC GAGGACGGCG GCTTCGAATT TCATCTGACC
CGCGAAGGGG GCCACAGCCA CCGCCGTATC ATCCATGCGG CCGATGCCAC CGGCGCGGCG
ATCTTCAATA CCCTGCTGGA GCAGGCACGG CAGCGTCCCA ACATCGAGCT GCTGGAGCAG
CGTGTGGCGG TCGACCTGAT CACCGAGCGC AAGCTCGGCC TGGATGGCGA GCGCTGCCTG
GGCGCCTATG TGCTGGATCG CGAGAAGGGC GAAGTGGACA CCTTCGCCGC GCGTTTCGTG
ATACTCGCCA CCGGCGGCGC CGCCAAGGTC TACCTCTATA CCAGCAACCC CGATGGCGCC
TGCGGCGACG GCATCGCCAT GGCCTGGCGC GCCGGTTGCC GGGTAGGCAA CCTGGAATTC
AACCAGTTCC ATCCCACCTG CCTGTATCAC CCGCAAGCCA AGAGCTTTCT GGTCACCGAA
GCCGTGCGTG GCGAAGGCGG GCTGCTCAAG CTGCCCAACG GCGAGCGCTT CATGCCGCGC
TTCGACGAAC GCGCCGAGCT GGCGCCGCGC GATATCGTCG CGCGCGCCAT CGACCATGAG
ATGAAGCGCC TGGGGATAGA CTGCGTGTAC CTGGACATCA GCCACAAGCC GGCCGAGTTC
ATCACCAGCC ACTTCCCCAC CGTCTATGAG CGCTGCCTGA GTTTCGGCAT CGACATCACC
AAGCAGCCCA TCCCGGTGGT GCCGGCCGCG CATTACACCT GCGGCGGGGT GGTCGTCGAC
CAGTACGGCC GTACCGACGT GCCGGGCCTG TATGCCATCG GCGAAACCAG CTTCACCGGT
CTGCACGGCG CCAACCGCAT GGCCAGCAAC TCCTTGCTGG AGTGCTTCGT GTACGCCCGC
TCGGCCTGTG CCGACATCGT CGCCCAGCTC GATGCAGTGG ACATGCCGAC CAACCTGCCC
TGCTGGGACG CCAGCCAGGT GACCGACTCC GACGAAGACG TGATCATCGC GCACAACTGG
GACGAGCTGC GGCGCTTCAT GTGGGACTAC GTGGGCATCG TGCGCACCAA CAAGCGCCTG
CAGCGCGCCC AGCACCGCGT ACGCCTGCTG CTGGACGAGA TCGATGAGTT CTACAGCAAC
TACAAGGTCA GTCGCGACCT GATCGAGCTG CGCAACCTGG CGCTGGTCGC CGAGCTGATG
ATCCGCTCGG CCATGCAGCG CCATGAAAGC CGCGGCCTGC ACTACACCCT CGATTACCCC
GAGCAGTTGG CCGAAGCCCA GGACACTATT CTGGTGCCGA CACCCCAGGC TCAGCCCAGC
GTCGCCTGCT GA
 
Protein sequence
MSHHFQHDVL VIGSGAAGLT LALTLPPSLR VAVLSKGSLA NGSTYWAQGG VAAVLDDTDT 
VESHVADTLN AGAGLCRADA VRFTVEHSRE AIQWLIDQGV PFTREAETAR EDGGFEFHLT
REGGHSHRRI IHAADATGAA IFNTLLEQAR QRPNIELLEQ RVAVDLITER KLGLDGERCL
GAYVLDREKG EVDTFAARFV ILATGGAAKV YLYTSNPDGA CGDGIAMAWR AGCRVGNLEF
NQFHPTCLYH PQAKSFLVTE AVRGEGGLLK LPNGERFMPR FDERAELAPR DIVARAIDHE
MKRLGIDCVY LDISHKPAEF ITSHFPTVYE RCLSFGIDIT KQPIPVVPAA HYTCGGVVVD
QYGRTDVPGL YAIGETSFTG LHGANRMASN SLLECFVYAR SACADIVAQL DAVDMPTNLP
CWDASQVTDS DEDVIIAHNW DELRRFMWDY VGIVRTNKRL QRAQHRVRLL LDEIDEFYSN
YKVSRDLIEL RNLALVAELM IRSAMQRHES RGLHYTLDYP EQLAEAQDTI LVPTPQAQPS
VAC