Gene Pmen_1448 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1448 
Symbol 
ID5109737 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1610211 
End bp1610723 
Gene Length513 bp 
Protein Length170 aa 
Translation table11 
GC content69% 
IMG OID640502677 
ProductGCN5-related N-acetyltransferase 
Protein accessionYP_001186945 
Protein GI146306480 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1247] Sortase and related acyltransferases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.0935976 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value0.790583 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCAGT TGCTCATGCG CCAGGCCGCC CGCGGGGATG TCGAGGCGCT CTGTGCGCTG 
CTCCTCGAGC ATGGGCCCAA CCCCTGGAAT CATCTGCCGG AGGCGGAGGT GCGCAGCCAT
CTTGCAGCCA TCGCCGAGGG TGCGACGCTG GCGGTGCTGG CCGAGGAGCA GGGGCGCTTG
CTGGGCTTCG TCAGCTATCG CCTGACCAGG GATTTCGCCG CCCATCAACC GCTGGCGCGT
GCCGGGCACG TGCATGGCTA TATCTGCGAG GCGGTGGTGC ATCGCGACTG CGTCGGCCGC
GGACTCGGCG CCCGTCTGCT GGGCGAGGCG GTGCAGGACC TCTGGCGCCT GGGCGTGCAC
GACATCTATA TCGATCACCA CGAGGAGAAT GCCGCCTCGG CCGGGATGAT GCGCAAGGCC
GGTTTCACCG AGCTGCTGAC CTACGCCGAC CCGGCGCGGC GGCCCAACGG CTCGGGGCGT
TCGACGCTGT GCTGTCTGCG GGCTGGGCAA TGA
 
Protein sequence
MSQLLMRQAA RGDVEALCAL LLEHGPNPWN HLPEAEVRSH LAAIAEGATL AVLAEEQGRL 
LGFVSYRLTR DFAAHQPLAR AGHVHGYICE AVVHRDCVGR GLGARLLGEA VQDLWRLGVH
DIYIDHHEEN AASAGMMRKA GFTELLTYAD PARRPNGSGR STLCCLRAGQ