| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1443 |
|---|
| Symbol | |
|---|
| ID | 5109732 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 1606590 |
|---|
| End bp | 1608095 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640502672 |
|---|
| Product | putative monovalent cation/H+ antiporter subunit D |
|---|
| Protein accession | YP_001186940 |
|---|
| Protein GI | 146306475 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0476084 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.723243 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCACG CCATCATCCT GCCCGTTCTG CTGCCGATGT TCTTCGGCGC GCTGCTGTTG
GTCGGTCACG GCTGGTCGCG TGAGATCAAG CGGGGTATTT CCCTGCTGGG CTGCCTGGCA
CTGCTGCCGG TGTGCATCCA TCTGCTGCTG CTGGCCGGGG CAGGGCAGTT GCAGGTCTAT
GCCCTGGGCA ACTGGGCCGC GCCGTTCGGC ATCATGCTGC TGCTGGACCG TTTCAATGCG
GTGATGCTGC TGCTGACCGC GCTGCTCGCC ACCTTCGCCC TGCTGTACGC CTGCCGCGGC
GAGGATGAGC AGGGGCCGAA CTTCCACGCG CTGTTCCAGT TCCAGTTGCT GGGCATCAAC
GGTGCGTTCC TCACCGCCGA TCTGTTCAAC CTCTTCGTGT TCTTCGAGAT CCTGCTGATC
TCGTCCTACG CGCTGCTGTT GCACGGCAAT CGCGCCAGTC AGGTCAAGGC CGGCGTGCAC
TACGTGGTGC TCAACCTGCT GGGGTCGTCG TTCTTCCTGA TCGGCGTCAG CCTGCTGTAT
GGCCTGACCG GCACGCTGAA CATGCCCGAC CTGGCTGCCC GCGTGGCCAG CGCCGATGTC
GCCGATGCGC CGCTGCTCAA GGCCGCCGCC TATCTGCTGC TGATCGTCTT CGGCCTCAAG
GGGGCGGTGC TGCCGCTGTA CTTCTGGCTG CCGCGCGCCT ATGCCGCGGC GCCGGCCTCG
GTGGCTGCGC TGTTCGCCAT CATGACCAAG GTCGGCTTCT ACGCAATCGT GCGGGTGTTC
ACCCTGATCT TCGGCGAGCA GGCCGGGCCG CTGGCCAATC TGGGGCACGA ACTGCTCTGG
TGGCTGGCCC TGCCGACCAT CGCCCTGGGC GTGATCGGCG CCTTGGGCGC ACGCCAGCTG
CAGGTGCTGC TGGCCTATCT GGTGGTGGTG TCGGTGGGCA TGCTGATGGC CGGCTTTGCC
ATCGGCACCG CCGCGGCGCT GAGCGCCGCG CTCTATTACC TGGTGCACAG CACATTGATC
AGTGCCGCGC TGTTCCTGCT CGCCGGCCTG GTGGTCGCCC AGCGTGATTC GGCCGGTGGC
GATCTGCAGC AGGAGCGCGT GCTACGGCAG CCGCTGCTGC TGGGTTGCCT GTTCTTCTTC
GGTGCGATTT CCGTCGCCGG TCTGCCGCCG TTTTCCGGCT TCATCGGCAA GATGCTGCTG
CTGCGCGCGG CCGAGCCGGG CTGGCAGGCC TGGAGCCTGT GGCCCGTGGT ACTGATTGGC
GGCTTGCTGA CCCTGATTGC CCTCAGTCGC GCCGGTACCA CGCTGTTCTG GCTCGGCCAG
CAAACATCGC CGTCGACGGC CGCGCCGGCC GATCGCGTCA GTCTGCTGGC GGCCCTGGGC
TTGCTGCTGG CCAGCCCGCT GCTGCTGATC GGCGCCGCAC CGATCCTGGC CTATCTGGAA
GCGGCAGCGG TGCAGTTGCT CGATCTGCAG CCCTACCTGT CGATCATCGC CGGAGGTGCG
GCATGA
|
|---|
| Protein sequence | MSHAIILPVL LPMFFGALLL VGHGWSREIK RGISLLGCLA LLPVCIHLLL LAGAGQLQVY
ALGNWAAPFG IMLLLDRFNA VMLLLTALLA TFALLYACRG EDEQGPNFHA LFQFQLLGIN
GAFLTADLFN LFVFFEILLI SSYALLLHGN RASQVKAGVH YVVLNLLGSS FFLIGVSLLY
GLTGTLNMPD LAARVASADV ADAPLLKAAA YLLLIVFGLK GAVLPLYFWL PRAYAAAPAS
VAALFAIMTK VGFYAIVRVF TLIFGEQAGP LANLGHELLW WLALPTIALG VIGALGARQL
QVLLAYLVVV SVGMLMAGFA IGTAAALSAA LYYLVHSTLI SAALFLLAGL VVAQRDSAGG
DLQQERVLRQ PLLLGCLFFF GAISVAGLPP FSGFIGKMLL LRAAEPGWQA WSLWPVVLIG
GLLTLIALSR AGTTLFWLGQ QTSPSTAAPA DRVSLLAALG LLLASPLLLI GAAPILAYLE
AAAVQLLDLQ PYLSIIAGGA A
|
|---|
| |