Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1401 |
Symbol | |
ID | 5109690 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 1563069 |
End bp | 1564100 |
Gene Length | 1032 bp |
Protein Length | 343 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640502630 |
Product | electron transport complex, RnfABCDGE type, D subunit |
Protein accession | YP_001186898 |
Protein GI | 146306433 |
COG category | [C] Energy production and conversion |
COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 0.875463 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCCTGC CCCGCATCAC CTCGCCCCAC GCCAAGGGCA GCAACCGTAC CCAGCAGGTC ATGCTGCAGG TGCTGCTGGC CACCGTGCCG GGCATTCTCG CCCTGACCTG GCTGTTCGGC GCCGGCACGC TGTACAACCT GGCCCTGGCC AGCCTGTTCG CCCTGGCCTT CGAGGCGGCG ATCCTGGCCG CGCGCCAACG TCCGCTGGCC TTCTTTCTCA AGGACTACAG CGCGCTGGTC ACCGCCGTGC TGCTGGCCCT GGCCCTGCCA CCCTATGCAC CCTGGTGGCT GACCCTGATC GCCTGCGGCT TCGCCATCGT CTTCGGCAAG CAGCTCTATG GTGGCCTCGG GCAGAACCCC TTCAACCCGG CCATGCTCGG CTATGTGGTG GTGCTGATCT CCTTCCCGGT GGAGATGACC AGTTGGCCCG CGCCGCACGG CGTCGCTGCG CTGGACGGCA TCAAGCACAT ACTCGGCATC GCCAGCCTGC CCGATGGCTG GGCCCAGGCC ACCGCGCTGG ACGCGCTGAA AGTGAACAAG AGCCTGACCA TCGACGAGCT GCGCGCCGCC AACCCGGCCT TCGGCCATTT CGGCGGTGCC GGCAGCGAGG CGGTCAACCT GGCGTTCCTC GCCGGCGGCC TGTACCTGCT GCACAAGCGC CTGATCACCT GGCACGCACC AGTGGGCATG CTCGCTGCGC TGTTCGTCAT GAGCCTGCTG TTCTGGAACG GCAGCGGCTC GGATTCCAAC GGTTCGCCGC TGTTCCACCT GCTGACCGGC GCCACCATGC TCGGCGCCTT CTTCATCGTC ACCGATCCGG TTTCCGGCGC GACCAGCAAT CGCGGGCGTC TGGTGTTCGG CATCGGCGTC GGCGTACTGG TCTACGTGAT CCGCGCCTGG GGCGGCTACC CGGACGCGGT GGCCTTCGCC GTGCTGCTGA TGAACCTGGC GGCGCCGACC ATCGACTACT ACACCCGGCC GCGTAGCTAC GGCCACCGCA AGCCCAACAG CGGCTTCAAG CTGGGAGAAT GA
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Protein sequence | MALPRITSPH AKGSNRTQQV MLQVLLATVP GILALTWLFG AGTLYNLALA SLFALAFEAA ILAARQRPLA FFLKDYSALV TAVLLALALP PYAPWWLTLI ACGFAIVFGK QLYGGLGQNP FNPAMLGYVV VLISFPVEMT SWPAPHGVAA LDGIKHILGI ASLPDGWAQA TALDALKVNK SLTIDELRAA NPAFGHFGGA GSEAVNLAFL AGGLYLLHKR LITWHAPVGM LAALFVMSLL FWNGSGSDSN GSPLFHLLTG ATMLGAFFIV TDPVSGATSN RGRLVFGIGV GVLVYVIRAW GGYPDAVAFA VLLMNLAAPT IDYYTRPRSY GHRKPNSGFK LGE
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