| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1358 |
|---|
| Symbol | |
|---|
| ID | 5109411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 1519304 |
|---|
| End bp | 1522999 |
|---|
| Gene Length | 3696 bp |
|---|
| Protein Length | 1231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640502587 |
|---|
| Product | biotin carboxylation domain-containing protein |
|---|
| Protein accession | YP_001186855 |
|---|
| Protein GI | 146306390 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG1038] Pyruvate carboxylase
[COG1984] Allophanate hydrolase subunit 2
[COG2049] Allophanate hydrolase subunit 1
[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00724] biotin-dependent carboxylase uncharacterized domain
[TIGR02712] urea carboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.306676 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.336229 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGACA AACTCCTGAT CGCCAACCGT GGCGCCATTG CCTGCCGCGT CCTGCGCACC
CTGCGTGAAC TGAAGGTCAG CGGCGTGGCC GTGTATGCCG AGGCCGACGC CGCCAGCCTG
CATATCCAGC AGGCCGATGA AGCCTTCTGC CTCGGCGACG GCCCCGCCGC GCAGACCTAC
CTCGTGGTCG ACAAGATTCT CGCCGCGGCC AAGGCCAGCG GCGCCAAAGC CATTCACCCC
GGCTACGGCT TTCTCTCGGA AAACGCGGCG TTTGCCGAAG CCTGCGAAGC GGCCGGCATC
GCCTTCGTCG GCCCGACGCC GGAGCAACTG CGCGTATTCG GCCTCAAGCA CACCGCCCGC
GCCCTGGCCA AGCAGCACGG TGTGCCCATG CTCGAAGGCA CCGAGCTGCT GGAAAGCATC
GATGCGGCGC TGGCCGCCGG CGAGGCGGTC GGTTACCCGG TGATGCTGAA AAGCACTGCA
GGCGGTGGCG GCATCGGCAT GCGCGTCTGC CGCTCGGCCG CCGAACTCAG CGAAGCCTTC
GAGGCGGTCA AGCGCCTGGG GCAGAACAAC TTCAGCGACA GCGGCGTATT TATCGAGAAG
TACATCCAGC GCGCCCGCCA CCTGGAAGTG CAGGTATTCG GCGACGGCCA GGGCGAGGTG
CTCGCCCTCG GCGTGCGCGA CTGCTCGGTA CAGCGGCGCA ACCAGAAGGT GCTGGAAGAA
ACCCCGGCAC CGAACCTGCC TGCCGGCATG AATGAGGCGC TGTGCGCGGC GGCGATCAAG
CTGGCCAAGG CGGTCAGTTA CCGCAGCGCC GGCACTGTCG AATTCGTCTA CGACAGCGAG
GCCGAACGCT TCTACTTCCT CGAAGTGAAC ACCCGCCTGC AGGTCGAACA TGGCGTCACC
GAACAGGTGT GGGGCGTCGA CCTGGTGCGC TGGATGATCG AACTGGCGGC CGGCGATCTG
CCGCCGCTGA GCGAACTGGC CAAGACGCTA AAGCCAAACG GCCATGCCAT CCAGGCGCGC
CTGTACGCCG AAGATCCGGG CCGGGATTTT CAGCCCAGCC CCGGCCTGCT GACTGCCGTG
GCCTTCCCGC CCGCTGACGG CAAGGCGCTG CGTATCGACA CCTGGGTCGA AGCCGGTTGC
GAGATCCCGC CCTACTTCGA CCCGATGATC GCCAAGCTGA TCACCTGGGC GCCAAGCCGC
GAAGAAGCCT CCCATGCGCT GAATCAGGCC CTGGCAGGCA CTCTGCTCTA CGGCGTGGAA
TGCAACCGCG ACTACCTGCG CCAGATTCTC AGCGATGCGC CTTTCGCCAG CGGCCATCCC
TGGACCCGCT GCCTGGAAAA CCTCGTCTAT CAGGCCAGCA CCTTCGAAGT GCTCAGCGCC
GGCACCCAGA CCAGTGTGCA GGACTTCCCC GGCCGCCTCG GCTACTGGGC CGTCGGCGTA
CCGCCGTCCG GGCCGATGGA CAGCCGCGCC CTGCGCCTGG GCAACCGCCT GCTCGGCAAC
GACGAAGGCG CCGCCGGCCT GGAAATCACC ATGAGCGGCC CGCTGCTGCG CTTCAACTGC
GACGCCGTGG TCGCCGTCAC CGGCGCAGAG ATTCCGCTGA GCATCGATGG CGTAGAACAG
CCGATGAACA CCGCGCTGCC GATCGAGGCC GGCAGCACCC TGACGCTCGG CACCATCGCA
GGCAGCGGCG CGCGCAGCTA CCTGAGCATT CGCGGCGGCA TTCAGGTGCC GGACTACCTG
GGCAGCAAGA GCACCTTTAC CCTCGGCCAG TTCGGCGGCC ATGGGGGCCG TGCCCTGCGC
GCCGGCGACG TGCTGCACCT GCTGCAGCTG GCCGATACCG GCAGCGGCGC AAAACTGCCC
GCCGAGCTCT GCCCGGCCCT GCCGGCGGTA CGCGAGCTGC GCGTGATCTA CGGCCCGCAC
GGCGCGCCGG AATATTTCAC ACCCGCCTAT GTCGACAGCT TCCTCGCCAC CGAGTGGGAA
GTGCACTTCA ACTCCAGCCG CACCGGCGTG CGCCTGATCG GGCCGAAACC GGAATGGGTG
CGCGACAGCG GCGGCGAAGC CGGCCTGCAC CCGTCCAACA TCCACGACAA CCCCTACGCC
ATCGGCGCGG TGGACTTCAC CGGCGATATG CCGGTGATTC TGGGGCCGGA TGGCCCCAGC
CTGGGCGGCT TCGTCTGCCT GGTAACCATC ATCGAGGCCG ACCTGTGGCA GCTCGGCCAG
CTCAAGGCCG GCGACAAGGT GCGCTTCGTC CCGGTGGATA TCGCCACGGC ACGGGAGTTG
GCCAAAGCCA GTGCCAGCGA ATGCACCAGC CTTTGTGGGA GCGGCTTCAG CCGCGATGCA
GGCAACACCG AAATCGCGGA TAAATCCGCT CCTACAGACG CGACCGTAGC CCGGATGCAA
TCCGGGGAAA ACGCAGCGCC TGAATCCCGG ATTGCATCCG GGCTACAAAG CCCCATCGTC
CTCGACATCG GCCAGGCCGA CACCCGCCTG GTCGCACGCC TGTCCGGCGA CACCCACCTG
CTGCTGGAAA TTGGCCAGCC GGAACTGGAC CTGGTGCTGC GCTTCCGTGG CCACGCGCTG
ATGCAGGCGC TGGAGGCCAA GCGGCTAGCC GGCGTGATCG ACCTCACCCC CGGCATTCGC
TCGCTGCAGG TGCACTACCA GCCGGAAACC CTGCCGCTGC AGCGCCTGCT CGACCTAGTC
GCCGGCGAGT GGGACGCGGT ATGCGCCGCC AAGGATCTGA AGGTGCCGTC GCGCATCGTC
CACCTGCCGC TGTCCTGGGA CGACCCAGCC TGCCAGCTGG CCATCGAGAA ATACATGACC
ACCGTGCGCA AGGACGCCCC CTGGTGCCCG AGCAACCTGG AGTTCATCCG CCGCATCAAC
GACCTGCCGA ACCTCGACGA GGTGTACCGC ACCGTGTTCG ACGCCAGCTA CCTGGTCATG
GGCCTGGGCG ACGTCTATCT CGGCGCGCCG GTGGCCACGC CGCTGGACCC ACGCCATCGC
CTGGTCACCA CCAAGTACAA CCCGGCGCGC ACCTGGACGG CGGAAAACTC CGTCGGCATC
GGCGGCGCCT ATATGTGCGT GTACGGCATG GAAGGCCCCG GCGGCTATCA GTTCGTCGGC
CGTACCCTGC AGATGTGGAA CCGCTACCGC GAGGTCGAGG CCTTCGACGG CAAGCCCTGG
CTGCTGCGCT TCTTCGACCA GATCCGCTTC TACCCGGTAT CGGCAGACGA GCTGCTGCGC
ATCCGCCGCG ACTTCCCGCT GGGTCGTTAC CCGCTGCGCA TCCAGCACAG CGAACTGGCC
CTGGCCGACT ACCAGCGCTT TCTCGATGAA GAAGCAGAGG GCATCGCCGC CTTCCGTCAG
CAGCAGCGCG CGGCTTTCGA TGCCGAGCGC CAGCGCTGGA TCGAATCGGG TCAGGCGCAT
TTCGAAGTCG AGGAAGTGGC CGCCGAGCTT GGCGATGACG CCCCGTTGAG CGCCGGTCAG
CACGGCATCG ACAGCCATAT CGCCGGCAAC CTCTGGCAGG TGCAGGTCGA GGCAGGCGCA
CAGGTGCAGG CCGGCGACGT GCTGGTGATT CTCGAATCGA TGAAGATGGA GATTCCGCTG
ACCGCACCGG TGGCCGGCAC CGTACGCGAG GTGCGTGTGC AGCCCGGTTC GCCGGTACGC
GCCGGGCAGC GCGTGGTGGT GCTGGAAGAG GCCTGA
|
|---|
| Protein sequence | MFDKLLIANR GAIACRVLRT LRELKVSGVA VYAEADAASL HIQQADEAFC LGDGPAAQTY
LVVDKILAAA KASGAKAIHP GYGFLSENAA FAEACEAAGI AFVGPTPEQL RVFGLKHTAR
ALAKQHGVPM LEGTELLESI DAALAAGEAV GYPVMLKSTA GGGGIGMRVC RSAAELSEAF
EAVKRLGQNN FSDSGVFIEK YIQRARHLEV QVFGDGQGEV LALGVRDCSV QRRNQKVLEE
TPAPNLPAGM NEALCAAAIK LAKAVSYRSA GTVEFVYDSE AERFYFLEVN TRLQVEHGVT
EQVWGVDLVR WMIELAAGDL PPLSELAKTL KPNGHAIQAR LYAEDPGRDF QPSPGLLTAV
AFPPADGKAL RIDTWVEAGC EIPPYFDPMI AKLITWAPSR EEASHALNQA LAGTLLYGVE
CNRDYLRQIL SDAPFASGHP WTRCLENLVY QASTFEVLSA GTQTSVQDFP GRLGYWAVGV
PPSGPMDSRA LRLGNRLLGN DEGAAGLEIT MSGPLLRFNC DAVVAVTGAE IPLSIDGVEQ
PMNTALPIEA GSTLTLGTIA GSGARSYLSI RGGIQVPDYL GSKSTFTLGQ FGGHGGRALR
AGDVLHLLQL ADTGSGAKLP AELCPALPAV RELRVIYGPH GAPEYFTPAY VDSFLATEWE
VHFNSSRTGV RLIGPKPEWV RDSGGEAGLH PSNIHDNPYA IGAVDFTGDM PVILGPDGPS
LGGFVCLVTI IEADLWQLGQ LKAGDKVRFV PVDIATAREL AKASASECTS LCGSGFSRDA
GNTEIADKSA PTDATVARMQ SGENAAPESR IASGLQSPIV LDIGQADTRL VARLSGDTHL
LLEIGQPELD LVLRFRGHAL MQALEAKRLA GVIDLTPGIR SLQVHYQPET LPLQRLLDLV
AGEWDAVCAA KDLKVPSRIV HLPLSWDDPA CQLAIEKYMT TVRKDAPWCP SNLEFIRRIN
DLPNLDEVYR TVFDASYLVM GLGDVYLGAP VATPLDPRHR LVTTKYNPAR TWTAENSVGI
GGAYMCVYGM EGPGGYQFVG RTLQMWNRYR EVEAFDGKPW LLRFFDQIRF YPVSADELLR
IRRDFPLGRY PLRIQHSELA LADYQRFLDE EAEGIAAFRQ QQRAAFDAER QRWIESGQAH
FEVEEVAAEL GDDAPLSAGQ HGIDSHIAGN LWQVQVEAGA QVQAGDVLVI LESMKMEIPL
TAPVAGTVRE VRVQPGSPVR AGQRVVVLEE A
|
|---|
| |