| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1357 |
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| Symbol | |
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| ID | 5109410 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1517685 |
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| End bp | 1519211 |
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| Gene Length | 1527 bp |
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| Protein Length | 508 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640502586 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001186854 |
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| Protein GI | 146306389 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.255633 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCGTC GGCGACGGCA CGCTAGCATT GGGCCACGCA ATCAAGGCTC GGACCTCATG
CCACTCAGCA CTTCCCGCAA GGCCCAGTTC ACCCTTCTGC TACTGCTGGG CACCCTGCTG
CTGGGAGGCT TTCTCGCCAC CAGCCTGGCC AGTTACCACG CCTCGCGCGA AAGCATTCGC
CACAACATCG TCAACACCGA GCTGCCGCTG ACCTCGGACA ACATCTACTC CGAGATCCAG
AAAGACCTGA TCCGCCCGAC GCAGATCGCC TCGATGATGT CGCGCGACAC CTTCCTGCGC
GACTGGGCGC TGGCCGGCGA GCTCGATCCC GAGCCCATCA CCCGCTACCT GCGCGAGATC
CAGGACCACT ACGGCACCTT CACCAGCTTC TTCATCTCCG AACGCACCCG CACCTACTAC
CAGGCCAAGG GCGTGCTCAA GCAGGTCCGC GAGGACGAGC CGCGCGACGC CTGGTACTTC
CGCGTGCGTC AGATGAGCGA GCCTTACGAG ATCAGCGTCG ACCCGGACAT GGCCAATGCG
GATCGGCTGA CCTTCTTCAT CAACTTCAAG GTGTTCGACT ATGAGGAACG CTTTATCGGC
GTGGCCGGCG TCGGCCTCAC CGTGGATGCC GTGGTCAAGC TGGTGGACGA CTACCAGCGG
CGCTACGACC GCAGCATCTT CTTCACCGAC CGCAGCGGCC TGCTGGTACT GACCGGCGCC
GATGGCGGCC CCATGGGCTC TCGCCGTGGC CAGGCGCTCA ACACCATCGA CGGCCTGGAG
AACCTGCTGT TCGAACTGCC GCGCCCCGAA AGTGGCAACT TCAGCTATCA GGAGCACGGC
CGCGGCCATT TCCTCAACGT GCGTTACATC CCCGAACTGG ACTGGTACCT GTTCGTCGAT
AAGCACGAGG AAGGCGCCCT GGCCGGCATC CGCAAGAGCC TCTACCTCAA CCTGCTGATC
TGCACCCTGA TCACCCTGGC CGTGCTGCTT CTGGTCTACC TCGCCACACG CCGCTACCAG
CGCCGCATCG CCGCCCTGGC CACCACCGAC AGCCTCACCG AACTGCCCAA CCGCCGCGGC
TTCGACATCC TCGCCGCGCA GGCACTGCAG GAGGCGCAGC GAGACAGCAG CCCGCTGTGC
GCGGTGCTGC TGGACCTGGA CAACTTCAAG GCCCTTAACG ACGCCCATGG CCATCTGGCC
GGCGACGACG TGCTGCGCCG CTTCGCCCGC CAGCTGCGCG GCAGTCTGCG CCAGGCCGAC
ATCCTCTGCC GCTGGGGCGG CGAGGAATTC ATCCTGCTGC TGAAGAACAC CGACCGCAAC
GCCGCCCATG AGCTGGCCGA GAAACTGCGC CAGCAATGCG CCGAGCAGCG CTACCCGGTT
GCAGGCAAGG CCCTGCAGGT CACCGTCAGC CTCGGCCTCA GCCAGTGGCA AGAGGGCGAA
ACCCTGCACG ACCTGCTCGG CCGTACCGAT CGCGCGCTGT ATCGCGCCAA GCAGGCCGGG
CGCGACCGCG TCTGCGTCGA TCCCTGA
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| Protein sequence | MTRRRRHASI GPRNQGSDLM PLSTSRKAQF TLLLLLGTLL LGGFLATSLA SYHASRESIR
HNIVNTELPL TSDNIYSEIQ KDLIRPTQIA SMMSRDTFLR DWALAGELDP EPITRYLREI
QDHYGTFTSF FISERTRTYY QAKGVLKQVR EDEPRDAWYF RVRQMSEPYE ISVDPDMANA
DRLTFFINFK VFDYEERFIG VAGVGLTVDA VVKLVDDYQR RYDRSIFFTD RSGLLVLTGA
DGGPMGSRRG QALNTIDGLE NLLFELPRPE SGNFSYQEHG RGHFLNVRYI PELDWYLFVD
KHEEGALAGI RKSLYLNLLI CTLITLAVLL LVYLATRRYQ RRIAALATTD SLTELPNRRG
FDILAAQALQ EAQRDSSPLC AVLLDLDNFK ALNDAHGHLA GDDVLRRFAR QLRGSLRQAD
ILCRWGGEEF ILLLKNTDRN AAHELAEKLR QQCAEQRYPV AGKALQVTVS LGLSQWQEGE
TLHDLLGRTD RALYRAKQAG RDRVCVDP
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