Gene Pmen_1328 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1328 
Symbol 
ID5109381 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1488350 
End bp1489336 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content67% 
IMG OID640502556 
ProductABC transporter related 
Protein accessionYP_001186825 
Protein GI146306360 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.0207377 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTTACC TGAATATCCG CGGCCTGCAC AAAAGCTACG GCGCAACGCC CATCTTCACC 
GACATCAACA TCGAGATCGG CCAGGGCCAG TTCATCACCC TGCTCGGCCC GTCCGGCTGC
GGCAAGTCCA CCCTGCTGCG CTGCATCGCC GGCCTGACGG CAGTCGACGG CGGGCAGATC
CTGCTGGACG GCCAGGACCT GGTACCGATG CCGCCGCAAA AACGCGGCAT CGGCATGGTG
TTCCAGAGCT ATGCGCTGTT CCCCAACATG ACCGTGCAAC AGAACGTCGC CTTCGGCCTG
CGCATGCAGA AGGTCCCCGG TGCCGAGGCC AGCAAGCGCG TCGCCGAGGT GCTGGAGCTG
GTGGAGCTCA GCGACTACGC CGAGCGCTAT CCGCAGCAGC TCTCCGGCGG CCAGTGCCAG
CGTGTGGCCC TGGCCCGCTC GCTGGTCACT CGTCCGCGCC TGCTGCTGCT CGACGAACCA
CTGTCGGCGC TGGATGCGCG CATCCGCAAG CACCTGCGCG AGCAGATCCG CGCGATCCAG
CGCGAGCTGG GCCTGACCAC CATCTTCGTC ACCCACGATC AGGAAGAGGC GCTGGTGCTG
TCCGACCGCA TCGTGCTGAT GAACGGCGGC CAGATCGTCC AGAGCGGCGA CGCCGAAACC
CTCTACACTG CGCCGGCCGA TGCCTTCGCC GCCGGTTTTA TCGGCAACTA CAACCTGCTC
GACGCCGAGG CCGCCAGCCG CCTGCTCGGC CAGCCGATCG GCAGCCGCGT GGCGATTCGC
CCGGAAGCCA TCCACTTCGC CGACGGCGGC ATCGAGGCGC AGATTCGCAG CCACAGCCTG
CTCGGCAACG TGATCCGCTA CCGCGTCGAA GCGCGCGGCG TGGAATTGCT GGTGGACGTG
CTCAACCGCT CCGCCGCCGA CCTGCACCAC GACGGCCAGA GTGTCAGCCT GGCCATAGGC
GCCGATGCGA TCCGGGAGGT GGCGTGA
 
Protein sequence
MSYLNIRGLH KSYGATPIFT DINIEIGQGQ FITLLGPSGC GKSTLLRCIA GLTAVDGGQI 
LLDGQDLVPM PPQKRGIGMV FQSYALFPNM TVQQNVAFGL RMQKVPGAEA SKRVAEVLEL
VELSDYAERY PQQLSGGQCQ RVALARSLVT RPRLLLLDEP LSALDARIRK HLREQIRAIQ
RELGLTTIFV THDQEEALVL SDRIVLMNGG QIVQSGDAET LYTAPADAFA AGFIGNYNLL
DAEAASRLLG QPIGSRVAIR PEAIHFADGG IEAQIRSHSL LGNVIRYRVE ARGVELLVDV
LNRSAADLHH DGQSVSLAIG ADAIREVA