Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1328 |
Symbol | |
ID | 5109381 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 1488350 |
End bp | 1489336 |
Gene Length | 987 bp |
Protein Length | 328 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640502556 |
Product | ABC transporter related |
Protein accession | YP_001186825 |
Protein GI | 146306360 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0207377 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTACC TGAATATCCG CGGCCTGCAC AAAAGCTACG GCGCAACGCC CATCTTCACC GACATCAACA TCGAGATCGG CCAGGGCCAG TTCATCACCC TGCTCGGCCC GTCCGGCTGC GGCAAGTCCA CCCTGCTGCG CTGCATCGCC GGCCTGACGG CAGTCGACGG CGGGCAGATC CTGCTGGACG GCCAGGACCT GGTACCGATG CCGCCGCAAA AACGCGGCAT CGGCATGGTG TTCCAGAGCT ATGCGCTGTT CCCCAACATG ACCGTGCAAC AGAACGTCGC CTTCGGCCTG CGCATGCAGA AGGTCCCCGG TGCCGAGGCC AGCAAGCGCG TCGCCGAGGT GCTGGAGCTG GTGGAGCTCA GCGACTACGC CGAGCGCTAT CCGCAGCAGC TCTCCGGCGG CCAGTGCCAG CGTGTGGCCC TGGCCCGCTC GCTGGTCACT CGTCCGCGCC TGCTGCTGCT CGACGAACCA CTGTCGGCGC TGGATGCGCG CATCCGCAAG CACCTGCGCG AGCAGATCCG CGCGATCCAG CGCGAGCTGG GCCTGACCAC CATCTTCGTC ACCCACGATC AGGAAGAGGC GCTGGTGCTG TCCGACCGCA TCGTGCTGAT GAACGGCGGC CAGATCGTCC AGAGCGGCGA CGCCGAAACC CTCTACACTG CGCCGGCCGA TGCCTTCGCC GCCGGTTTTA TCGGCAACTA CAACCTGCTC GACGCCGAGG CCGCCAGCCG CCTGCTCGGC CAGCCGATCG GCAGCCGCGT GGCGATTCGC CCGGAAGCCA TCCACTTCGC CGACGGCGGC ATCGAGGCGC AGATTCGCAG CCACAGCCTG CTCGGCAACG TGATCCGCTA CCGCGTCGAA GCGCGCGGCG TGGAATTGCT GGTGGACGTG CTCAACCGCT CCGCCGCCGA CCTGCACCAC GACGGCCAGA GTGTCAGCCT GGCCATAGGC GCCGATGCGA TCCGGGAGGT GGCGTGA
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Protein sequence | MSYLNIRGLH KSYGATPIFT DINIEIGQGQ FITLLGPSGC GKSTLLRCIA GLTAVDGGQI LLDGQDLVPM PPQKRGIGMV FQSYALFPNM TVQQNVAFGL RMQKVPGAEA SKRVAEVLEL VELSDYAERY PQQLSGGQCQ RVALARSLVT RPRLLLLDEP LSALDARIRK HLREQIRAIQ RELGLTTIFV THDQEEALVL SDRIVLMNGG QIVQSGDAET LYTAPADAFA AGFIGNYNLL DAEAASRLLG QPIGSRVAIR PEAIHFADGG IEAQIRSHSL LGNVIRYRVE ARGVELLVDV LNRSAADLHH DGQSVSLAIG ADAIREVA
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