Gene Pmen_1309 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1309 
Symbol 
ID5109125 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1468992 
End bp1469405 
Gene Length414 bp 
Protein Length137 aa 
Translation table11 
GC content66% 
IMG OID640502535 
Productpeptidyl-tRNA hydrolase domain protein 
Protein accessionYP_001186806 
Protein GI146306341 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1186] Protein chain release factor B 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.892435 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value0.470671 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGATCA TCTCCAATGC CGTGCATCTG CCGCTCGAGG AAATCGAGCT GAGCGCCATT 
CGCGCCCAGG GTGCCGGCGG GCAGAACGTC AACAAGGTGT CCAGCGCCGT GCACCTGCGC
TTCGACAGCC AGGCCTCTTC GCTGCCGCCG TTCTACAAGG AGCGCCTGCT GGCGCTCGCC
GACAGCCGCA TCACCGCCGG CGGCGTGGTG ATCATCAAGG CGCAGCAGTA TCGCACCCAG
GAACAGAATC GCGCGGACGC CCTCGAGCGT TTGGCCGAGC TGATCCGCAG TGCCGGCAAG
GTGGAAAAGA AGCGCCGCCC GACCAAGCCG ACCCTGGGCT CGAAGAAGCG CCGCCTGGAC
GGCAAGAGCA AGCGCGGGGC GATCAAGGCG GGGCGGGGCA AGGTGGATTT CTAG
 
Protein sequence
MLIISNAVHL PLEEIELSAI RAQGAGGQNV NKVSSAVHLR FDSQASSLPP FYKERLLALA 
DSRITAGGVV IIKAQQYRTQ EQNRADALER LAELIRSAGK VEKKRRPTKP TLGSKKRRLD
GKSKRGAIKA GRGKVDF