Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1277 |
Symbol | tolB |
ID | 5109093 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1436695 |
End bp | 1437993 |
Gene Length | 1299 bp |
Protein Length | 432 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640502502 |
Product | translocation protein TolB |
Protein accession | YP_001186774 |
Protein GI | 146306309 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.154906 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 0.476044 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAATACCC TGATTCGTAT CGCCCTGCTG GGGCTGGTCA TGCTGGTCGG CAGCGTCCAG GCGGCCGACC CGCTGGTGAT CTCTCACGGC GCCGACCGCG CCACTCCGAT CGCCGTGGTG CCGTTCGGCT GGCAGGGCGG CTCGGTGCTG CCCGAGGACA TGTCGCAGAT CATCGGCAAC GACCTGCGCA ACTCCGGCTA CTTCGAGCCC ATCCCGCGGC AGAACATGAT CAGCCTGCCG ACCCAGGCCA GCGAAGTCAT CTACCGCGAC TGGAAGGCCC TCGGCGCGCA GTACGTGCTG GTCGGCAACA TCGTCCCCAA CGGCGGCCGC CTGCAGGTGC AGTACGCGCT GTTCAACGTC AACACCGAAC AGCAGGTCAT GACCGGCAAC GTCGGTGGCG GCACCGATCA GCTGCGCGAC ATGGCTCACC ATATCGCCGA CCAGTCGTTC GAGAAGCTCA CCGGCGTCAA GGGTGCGTTC TCCACGCGCC TGCTCTACGT CACGGCCGAG CGCATGGGCG CCAACAATAC CCGCTACACC CTGCAGCGCT CCGACTACGA CGGCGCTCGC GCCGTGACCC TGCTGCAGTC GCGTGAGCCG ATCCTGTCGC CGTCCTTCGC TCCCGATGGC CGCCGCATCG CCTACGTGTC GTTCGAGCAG CGTCGTCCGC GCATCTTCGT GCAGCACATC GATACCGGCC GCCGCGAGCA GATCACCAAC TTCGAAGGCC TCAACGGCGC GCCGGCCTGG TCGCCGGACG GCAATCGCCT GGCTTTCGTG CTGTCGCGTG ACGGCAACCC GGAAATCTAC GTGATGGACA TGGGCAGCCG GCAGATGCGC CGCATCACCA ACCATTACGC CATTGATACC GAACCCTTCT GGGGCAAGGA CGGTCAGACT CTGTACTTCA CCTCGGATCG CGCGGGCCGT CCGCAGATCT ACAAGACCAA CATCAATAGC GGGGCAGTGG AGCGAGTGAC CTTCGTCGGT AACTACAACG CCAACCCGAA ATTGTCGGCT GATGAGAAGA CCCTGGTGAT GATCCATCGT CAGGACGGTT TCACCGTGTT CAAGGTGGCT GCGCAGGACC TGGAAACCAA CCGTCTGCGC ATACTTTCAG ACACAAGTTT GGATGAGTCG CCCACTGTTG CGCCCAATGG CACCATGCTA ATCTACGCCA CCCGCCAGCA GGGCCGGGGA GTCTTGATGT TGGCGTCCAC CAATGGACGC GTGAGGCTCC CTCTTCCTAC CGCTCAAGGC GAAGTTCGAG AGCCTTCTTG GTCCCCTTAC CTGAACTGA
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Protein sequence | MNTLIRIALL GLVMLVGSVQ AADPLVISHG ADRATPIAVV PFGWQGGSVL PEDMSQIIGN DLRNSGYFEP IPRQNMISLP TQASEVIYRD WKALGAQYVL VGNIVPNGGR LQVQYALFNV NTEQQVMTGN VGGGTDQLRD MAHHIADQSF EKLTGVKGAF STRLLYVTAE RMGANNTRYT LQRSDYDGAR AVTLLQSREP ILSPSFAPDG RRIAYVSFEQ RRPRIFVQHI DTGRREQITN FEGLNGAPAW SPDGNRLAFV LSRDGNPEIY VMDMGSRQMR RITNHYAIDT EPFWGKDGQT LYFTSDRAGR PQIYKTNINS GAVERVTFVG NYNANPKLSA DEKTLVMIHR QDGFTVFKVA AQDLETNRLR ILSDTSLDES PTVAPNGTML IYATRQQGRG VLMLASTNGR VRLPLPTAQG EVREPSWSPY LN
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