| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1275 |
|---|
| Symbol | |
|---|
| ID | 5109091 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 1435257 |
|---|
| End bp | 1435709 |
|---|
| Gene Length | 453 bp |
|---|
| Protein Length | 150 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640502500 |
|---|
| Product | biopolymer transport protein ExbD/TolR |
|---|
| Protein accession | YP_001186772 |
|---|
| Protein GI | 146306307 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0848] Biopolymer transport protein |
|---|
| TIGRFAM ID | [TIGR02801] TolR protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.146064 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.370968 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAGAA TTCGCAACAG ACGCAAACCG GTCGCCGAGA TGAACGTGGT GCCCTACATC
GACGTGATGC TGGTGCTGCT GGTCATCTTC ATGGTCACCG CGCCCATGCT CAACCAGGGC
GTCAAGGTCG ACCTGCCCAA GGTCAGCAGC GAAGCGCTGC CGCAGGACAA CGACGCCCAG
GTGCTGACCA TTTCCATCAA GGCCGACAAG ACCTACTACT GGAACATGGG CAGCGAGGTC
GACGTCGATA CCGAGCAGGA GCGCGCCTCC ACCCTCGAGC AGATGACTCA GGCGGTTTCG
GCGATCATTG CCGAGAACCG TCGCCAGGGT AAGCAGGTGC AGGTGTTCGT GCGCGGTGAT
CGCACCGTCG ACTACGGCAC CGTGATGGCG GCCATGGGCG GCTTGCAACA GGCCGACGTG
GGCAACGTCG GATTGATTAC CGAGGCGCCC TGA
|
|---|
| Protein sequence | MARIRNRRKP VAEMNVVPYI DVMLVLLVIF MVTAPMLNQG VKVDLPKVSS EALPQDNDAQ
VLTISIKADK TYYWNMGSEV DVDTEQERAS TLEQMTQAVS AIIAENRRQG KQVQVFVRGD
RTVDYGTVMA AMGGLQQADV GNVGLITEAP
|
|---|
| |