Gene Pmen_1273 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1273 
Symbol 
ID5109089 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1434079 
End bp1434531 
Gene Length453 bp 
Protein Length150 aa 
Translation table11 
GC content62% 
IMG OID640502498 
Product4-hydroxybenzoyl-CoA thioesterase 
Protein accessionYP_001186770 
Protein GI146306305 
COG category[R] General function prediction only 
COG ID[COG0824] Predicted thioesterase 
TIGRFAM ID[TIGR00051] acyl-CoA thioester hydrolase, YbgC/YbaW family
[TIGR02799] tol-pal system-associated acyl-CoA thioesterase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.145521 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.288665 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCGCGC AAAACGGAGT CCAGCCGTTC AGTCACCGCT GCCGGGTCTA TTACGAAGAC 
ACCGATGCCG GTGGCATCGT CTACTACGTC AACTACCTCA AATTCATGGA GCGGGCTCGC
ACCGAGCGCC TGCGTGAGCT GGGTTTTGCC CAGTCGACGC TTGCCGGTGA GGGCCTGTTG
TTCGTCGTGC ATTCTGCCGA GGCGCGTTAT CACGCGCCGG CGCGCCTGGA TGACGAACTG
GTGATCAGCG CCGATGTGAT CGAATTGAAC CGTGCCAGCC TGCGCTTTCG TCAACAGGTC
AGGCGGGCCG CGGATGATGC GCTGCTCTGC GAAGGGCAGT TTCTGGTGGC CTGTGTGCGC
GCCGACAACT TGAAACCCCG GGCTATACCC GAATCCCTGC GACACGCGTT CGCCGGGACG
CAGGCGCCGG GTTTAATTGC AGCAGGAGAG TAA
 
Protein sequence
MRAQNGVQPF SHRCRVYYED TDAGGIVYYV NYLKFMERAR TERLRELGFA QSTLAGEGLL 
FVVHSAEARY HAPARLDDEL VISADVIELN RASLRFRQQV RRAADDALLC EGQFLVACVR
ADNLKPRAIP ESLRHAFAGT QAPGLIAAGE