Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1268 |
Symbol | aspS |
ID | 5109084 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1429024 |
End bp | 1430799 |
Gene Length | 1776 bp |
Protein Length | 591 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640502493 |
Product | aspartyl-tRNA synthetase |
Protein accession | YP_001186765 |
Protein GI | 146306300 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0173] Aspartyl-tRNA synthetase |
TIGRFAM ID | [TIGR00459] aspartyl-tRNA synthetase, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.132766 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 0.965215 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGCGCA GCCACTATTG CGGCCAACTG AACGAGAGCC TGGATGGCCA GGAAATCACC CTTTGCGGCT GGGTCCACCG TCGCCGTGAC CATGGTGGGG TGATCTTCCT CGATATTCGT GATCGTGAAG GCCTGGCCCA GGTGGTGTTC GACCCGGATC GCGCGGAGAC CTTCGCCAAG GCCGACCGCG TGCGCAGCGA ATACGTGGTG AAGATCACCG GCAAGGTGCG TCTGCGTCCG GCCGGTGCGG TCAATCCGAA CATGGCTTCC GGCGCCATCG AAGTGCTGGG CTACGAGCTG GACGTGCTCA ACGAGGCGGA AACCCCGCCG TTCCCGCTCA ACGAATACAC CGACGTCGGC GAGGAAACCC GCCTGCGCTA CCGTTTCATC GACCTGCGTC GTCCGGAGAT GGCCGAGAAG CTCAAGCTGC GCTCGCGCAT CACCTCGAGC ATTCGCCGCT ACCTGGACGA CAACGGCTTC CTCGACGTCG AGACGCCGAT CCTGACCCGC GCCACCCCGG AAGGTGCGCG GGACTATTTG GTGCCGAGCC GCACCCACGC CGGCAGCTTC TTCGCCCTGC CGCAGTCGCC GCAGTTGTTC AAGCAGCTGC TGATGGTTGC CGGCTTCGAC CGCTACTACC AGATCGCCAA GTGCTTCCGC GACGAGGACC TGCGTGCCGA CCGTCAGCCG GAATTCACCC AGATCGACAT CGAGACCAGC TTCCTCGATG AAAAAGACAT CATGGACATC ACCGAGACCA TGGTGCGCAA CCTGTTCAAG GAAGTGCTGG GTGTCGAGTT CGGCGAACTG CCGCACATGC CGCTGGCCGA AGCCATGCGC CGTTTCGGTT CGGACAAGCC GGACCTGCGC ATCCCGCTGG AGCTGGTGGA CGTCGAGGAC CAGCTCAAGG ACGTCGAATT CAAGGTCTTC GCAGGTCCCG CCAACGACCC GAAATGCCGC GTTACCGCGC TGCGCGTACC GGGCGGGGCG AGCATGCCGC GCAAGCAGAT CGACGACTAC ACCAAGTTCG TCGGCATCTA CGGCGCCAAG GGCCTGGCCT ATATCAAGGT CAACGAGCGC GCTGCCGGCG TTGACGGCCT GCAGTCGCCG ATCGTCAAGA ACATCCCGCT GGACAACATC AATGTCATCC TCGACCGCGT TGGCGCCGTC GATGGCGATA TCGTGTTCTT CGGCGCGGAC AAGGCCAAGA TCGTCAGCGA AGCCCTGGGC GCGCTGCGCA TCAAGCTGGG TCATGACCTG AACCTGCTGA CCTGCGAGTG GGCGCCGCTG TGGGTCGTCG ACTTCCCGAT GTTCGAGGAG AACGACGATG GCAGCCTGAC CGCCATGCAC CACCCCTTCA CCTCGCCCAA GTGCACCCCC GAGGATCTGG AGGCCAACCC GGCTGCCGCG CTGTCGCGCG CCTACGACAT GGTGCTCAAC GGCACCGAAC TGGGTGGCGG TTCGATCCGT ATCCACGACA AGGCCATGCA GCAGACCGTG TTCCGCGTGC TCGGCATCAG CGAAGACGAG CAGCAGGAAA AGTTCGGCTT CCTGCTGGAT GCGCTCAAGT ACGGTGCGCC GCCCCACGGT GGTCTGGCCT TCGGCCTGGA TCGCCTGGTA ATGCTGATGA CCGGCGCCAG CTCGATCCGC GAAGTGATCG CCTTCCCGAA AACCCAGAGC GCGGCCTGCG TCATGACCCA GGCGCCGGGT GTGGTGGATG CCAAGTCGCT GCGCGAGCTG CATATCCGCC TGCGTGAGCA AGCCAAGGCC GAATAA
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Protein sequence | MMRSHYCGQL NESLDGQEIT LCGWVHRRRD HGGVIFLDIR DREGLAQVVF DPDRAETFAK ADRVRSEYVV KITGKVRLRP AGAVNPNMAS GAIEVLGYEL DVLNEAETPP FPLNEYTDVG EETRLRYRFI DLRRPEMAEK LKLRSRITSS IRRYLDDNGF LDVETPILTR ATPEGARDYL VPSRTHAGSF FALPQSPQLF KQLLMVAGFD RYYQIAKCFR DEDLRADRQP EFTQIDIETS FLDEKDIMDI TETMVRNLFK EVLGVEFGEL PHMPLAEAMR RFGSDKPDLR IPLELVDVED QLKDVEFKVF AGPANDPKCR VTALRVPGGA SMPRKQIDDY TKFVGIYGAK GLAYIKVNER AAGVDGLQSP IVKNIPLDNI NVILDRVGAV DGDIVFFGAD KAKIVSEALG ALRIKLGHDL NLLTCEWAPL WVVDFPMFEE NDDGSLTAMH HPFTSPKCTP EDLEANPAAA LSRAYDMVLN GTELGGGSIR IHDKAMQQTV FRVLGISEDE QQEKFGFLLD ALKYGAPPHG GLAFGLDRLV MLMTGASSIR EVIAFPKTQS AACVMTQAPG VVDAKSLREL HIRLREQAKA E
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