Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1227 |
Symbol | |
ID | 5108728 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1388421 |
End bp | 1390760 |
Gene Length | 2340 bp |
Protein Length | 779 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640502452 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001186724 |
Protein GI | 146306259 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.148378 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGCGCA GTAGCTTCCA GGCGCGTATC AGCGGCGTCC TCATCCTGCT GTTGCTGGTG GTGATCGGCG CCCTCTATGT CGCGGTGAAG GCCGCCACCG ATGCCGCAGT ACGCGCCCAG GCGCAGGAGC AGCTGAACGT CGGCAGTCTC GTCTTCGAGC AGCTGCTGGC GCTGCGCAGC GACCAGCTGC AGCAGGCTGC TCAGGTACTG GCGGCCGATT TCGGCTTCAA GGAGGCGGTG GCCAGCGGCG ATGCGCCGAC CATCCGCTCG GCACTGGCCA ACCAGGGCGC GCGCATCAAC GCCGACGCGG TGTTCCTGCT GGGGCTGGAC GGCAGCCTGC AGGTGAGTAC CGACCCGGAC ATCGACGCCG AGGCGCTGGC CCGTATGGAC GGCCAGCTGC AGCGGCCACA GCGCGACGGG TCGCGGCTGT TCCTGCTGCC CATCGGCAGG CAGATCTATC TGCTGGTGGA TGCCACGGTG AGCGCACCGC TGCCGATCGC CCGAGTGCTG ATGGGCTTTG CCGTGGACCG CGAATTCGCC GTGCAGCTGC GCGAGCTGAC CCACCTGGAG CTGAGCCTGG TGGCCAGTCG CGACGGTGCG GCGCCGACCT GGATCAGCAC CCTGCCGGCC AGCGCCCAGG CGCTGCTGCA AGCGCAGATG AAGGCCGCCG GCGCGATGCC GCAGCGTCTC GACGGCGGCA GCGAGCACTA CTTCGGCCAG CACCTGCAAC TGGCCAGCGG CCCCGGCTAT CGCGTCGAGG CGCTGCTGCA CAAGTCCCTC GGCGAGGCCG AGGCGGCGTT CGCACCGCTG GATCGGCGCA TCCTGCTGAT CAGTCTGGGG GCCATGCTCG CCTCGCTGAT CGGTGCGCTG CTGCTGGCGC GCAGCCTGTC GCGACCGGTG CGCGAACTGG CCGCTGCCGC CCAGCGCATC GGCCGTGGCG ACTATCAGCA GCCGGTGGCC CTGGCCCGCA GCGACGAGCT GGGCCTGCTG GCGCTGGCGG TCAACGACAT GCAGCGCGGC ATCGCCGAGC GCGAGCGGCA GCTGGCGCAC AACGCCCTGC ACGACGCGCT GACCGGCCTG CCCAACCGCA CCCTGGCGCT GGAGCGGCTG GGCAGCGCGA TCACCGCCGG GAGGCCCACG GCGCTGCTGT ATCTGGGCGT GGGCAACTTC GCCGCGATCA ACGAGAGCTG TGGCCAGGGC GGCGGCGACC TGGCCCTGCA GCAGCTGGCC CGGCGCCTGC AGGCGACCCT GCGCCCCGGC GACAGCCTGG CGCGCCTGGT GGGCGATGAG TTCCTCCTGC TGCTGGAGCA GTGCGACGGC AGCAGTGCAG TGGCCAGCGC CGACCGTCTC CATCAGCTGC TGCTCAAGCC GCTGCGCATC GGCACGCTGG ACATCGCTCT GGACTGCCGC ATCGGCATTG CCGCCTACCC GGCCGACGGC GACACGCCGG ACGATCTGCT GCGCCGTGCG CGCATCGCCA TGCAGGACGC GGCCCAGCAT TCCGGGCGCC TGCAGCTCTA CCAGCAGGGC CGCGACGCCG CCCAGCAGCG GCAGATCCGC CTGATCCGCG ATCTGCGCCA CGCCGCCGCG CAGGGCCAGC TGCTGTTGCA CTACCAGCCC AAGCTGGACA TCCGCGAGGG TCTCGTGCGC CAGGCCGAGG CGCTGCTGCG CTGGCAGCAT CCGCAGCTGG GCATGGTCTC GCCCGGCGAG TTCATTCCGC TGGCCGAGCG CACCGGCAGC ATCCAGCTGC TTTCCGCCTG GGTCATCGAG GAGGCCATGC GCCAGCTGCA GGAGTGGGAC GGGCGCGGCA TCTGGGTACA GCTGTCGCTG AACATCTCTA CCGCAGACCT GCTCGACGCC GAGCTGCCGG GGCGCGTTGG CGCACTGCTG GCACGCTACC GGGTAGCGCC TGAGCAATTG ATCTTCGAAA TCACCGAGAG CGGGGTGATG CTCGATCCCG AGCGCGCGTT GCAGGTGCTG CACGGCTTGC GTGGCTACGG CATCGGCCTG TCGGTGGACG ATTTCGGCAC CGGCTATTCC TCGCTGGCGC AACTCAAGCG CATGCCGGTG CAGGAGCTGA AGATCGACCA GAGTTTCATC CGCGAGCTGG ACGACCACAG CGAGGACTCG GTGATCGTTC GCTCCACCAT CGAAATGAGC CACAGCCTGG GCCTGAAGGT GGTGGCCGAG GGCGTCGAAC TGGCGTCCGG CCTGAATCTT TTGCAGCGTT GGCACTGCGA TACCGCACAG GGCTACCTGA TCAGTCGACC GCTGGCCGCC GCGGCCTTCG AAGCCTGGCT GGCACAGCCC TATCGTCCCC CCCTGGCCAA GGTGCACTGA
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Protein sequence | MLRSSFQARI SGVLILLLLV VIGALYVAVK AATDAAVRAQ AQEQLNVGSL VFEQLLALRS DQLQQAAQVL AADFGFKEAV ASGDAPTIRS ALANQGARIN ADAVFLLGLD GSLQVSTDPD IDAEALARMD GQLQRPQRDG SRLFLLPIGR QIYLLVDATV SAPLPIARVL MGFAVDREFA VQLRELTHLE LSLVASRDGA APTWISTLPA SAQALLQAQM KAAGAMPQRL DGGSEHYFGQ HLQLASGPGY RVEALLHKSL GEAEAAFAPL DRRILLISLG AMLASLIGAL LLARSLSRPV RELAAAAQRI GRGDYQQPVA LARSDELGLL ALAVNDMQRG IAERERQLAH NALHDALTGL PNRTLALERL GSAITAGRPT ALLYLGVGNF AAINESCGQG GGDLALQQLA RRLQATLRPG DSLARLVGDE FLLLLEQCDG SSAVASADRL HQLLLKPLRI GTLDIALDCR IGIAAYPADG DTPDDLLRRA RIAMQDAAQH SGRLQLYQQG RDAAQQRQIR LIRDLRHAAA QGQLLLHYQP KLDIREGLVR QAEALLRWQH PQLGMVSPGE FIPLAERTGS IQLLSAWVIE EAMRQLQEWD GRGIWVQLSL NISTADLLDA ELPGRVGALL ARYRVAPEQL IFEITESGVM LDPERALQVL HGLRGYGIGL SVDDFGTGYS SLAQLKRMPV QELKIDQSFI RELDDHSEDS VIVRSTIEMS HSLGLKVVAE GVELASGLNL LQRWHCDTAQ GYLISRPLAA AAFEAWLAQP YRPPLAKVH
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