Gene Pmen_1221 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1221 
Symbol 
ID5108722 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1382063 
End bp1382824 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content61% 
IMG OID640502446 
ProductABC-2 type transporter 
Protein accessionYP_001186718 
Protein GI146306253 
COG category[S] Function unknown 
COG ID[COG1511] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.389129 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.00710452 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAACCTGT ACGCCATCAA GGCGATCTAC CTGTTCGAGC TGGCGCGCAC CTGGCGCACC 
CTGCTGCAGA GCATCGCCAC CCCGGTGATC AGCACCTCGC TGTACTTCGT GGTGTTCGGC
TCGGCCATCG GTTCGAGCAT GACCCAGGTG CAGGGCGTGA GCTACGGCGC CTTCATCATT
CCCGGGCTGA TCATGCTGGC GCTGCTGACC GAAAGCATTT CCAATGCCTC GTTCGGCATC
TACATGCCCA AGTACTCGGG GAGCATCTAC GAGATTCTTT CGGCGCCGGT CTCGTATCTG
GAGATTCTGA TCGGCTATGT CGGCGCGGCA GCGACCAAGT CGGTGATCCT CGGCCTGATC
ATCCTGCTGA CCGCACGGCT GTTCGTCGAT TTCGAGATTC AGCATCCGAT CTGGATGGCG
GCATTCCTGA TCCTCACCGC GCTGACCTTC AGCCTGTTCG GCTTCATCAT CGGCGTGTGG
GCCGACGGCT GGGAGAAGCT GCAGATCGTC CCGGCGCTGA TCGTCACGCC GCTGACCTTC
CTTGGCGGCG CCTTCTATTC GATCAGCATG CTGCCGCCGG CCTGGCAGAC GGTGACCCTG
TTCAACCCGG TGGTGTACCT GATCAGTGCC TTTCGCTGGA GCTTCTACGG CGTGTCCGAC
GTCAATGTCG GTCTGAGCCT GACGATGATC CTCGGCTTTC TCGGGCTGTG CATCCTGCTG
GTGGGCTGGA TCTTCAAGAC CGGATACCGG CTCAAGAGCT GA
 
Protein sequence
MNLYAIKAIY LFELARTWRT LLQSIATPVI STSLYFVVFG SAIGSSMTQV QGVSYGAFII 
PGLIMLALLT ESISNASFGI YMPKYSGSIY EILSAPVSYL EILIGYVGAA ATKSVILGLI
ILLTARLFVD FEIQHPIWMA AFLILTALTF SLFGFIIGVW ADGWEKLQIV PALIVTPLTF
LGGAFYSISM LPPAWQTVTL FNPVVYLISA FRWSFYGVSD VNVGLSLTMI LGFLGLCILL
VGWIFKTGYR LKS