| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1219 |
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| Symbol | |
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| ID | 5108720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1379809 |
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| End bp | 1380750 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640502444 |
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| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
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| Protein accession | YP_001186716 |
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| Protein GI | 146306251 |
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| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.0480458 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGA TCAAGGTGCT GCAGATCGGC CCGCTGAGCG AGCGATTCAA CCGCGAGCTG
GCGGCCGAGT ATGAGGTCAG TGCGCTGTGG CAACAGGCCG AGCCGCTGAC CTTTCTGCGC
GAGCAGGGCG GGCAGTTCCG CTACATGGTG TCCTCGGCGC GTTTCGGCTG CACGGCCGAG
CAGCTCGAGC TGTTGCCCAA TCTGCGTGCC ATCTGCAGTT TCGGCGTCGG CCATGACCCC
TATCCGCTTG AGCTGCTGCG CGAGCGCGGC ATCGCCATAA GCACCACGCC GGACGTGCTC
AACGACTGCG TGGCGGATCT GGCCATGGGC CTGATCATCG ACAGTGCGCG GCGTCTGTCG
GCCTCCGACC GCTTCGTGCG CAGCGGCGCC TGGGCCGACG GGCAGAGCTT CCCCCTGGCC
CGCCGGGTCA GCGGCAAGCG CCTGGGTATC GTCGGCCTCG GTCGCATCGG CGAGGCGGTG
GCGCAGCGGG CGGCGGGCTT CGCCATGCCG CTGCGTTATC ACAACCGCCG TGCGGTCAAG
GACAGTCCTT ATCAGCACGA GCCGGATCTG CTGGCGCTGG CGCGCTGGGC GGACTTCCTC
GTACTGACCT GCCCGGGCGG CGCGGCGACC CGGAATCTGA TCGATGCCGA AGTGCTCGAG
GCGCTGGGGG CCGACGGTTT CCTGATCAAT GTCGCGCGCG GTTCGGTGGT CGATGAGGCG
GCGCTGATCA CGGCCTTGCA AAATGGTGTG ATTGCCGGCG CCGGTCTCGA CGTCTACCAG
CACGAACCCC AGGTACCGCC GGCCTTGCGC GAGCTGGACA ACGTGGTGCT GCTGCCGCAT
GTCGGCAGCG CCAGCGTCGA GACCCGCCAG CAGATGGCCG ACCTGGTGCT GGACAACCTG
CGTTCCTTCG TCGCCAGCGG CAAGCTGTTG ACTCCGCTGT AG
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| Protein sequence | MSKIKVLQIG PLSERFNREL AAEYEVSALW QQAEPLTFLR EQGGQFRYMV SSARFGCTAE
QLELLPNLRA ICSFGVGHDP YPLELLRERG IAISTTPDVL NDCVADLAMG LIIDSARRLS
ASDRFVRSGA WADGQSFPLA RRVSGKRLGI VGLGRIGEAV AQRAAGFAMP LRYHNRRAVK
DSPYQHEPDL LALARWADFL VLTCPGGAAT RNLIDAEVLE ALGADGFLIN VARGSVVDEA
ALITALQNGV IAGAGLDVYQ HEPQVPPALR ELDNVVLLPH VGSASVETRQ QMADLVLDNL
RSFVASGKLL TPL
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