| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1215 |
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| Symbol | |
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| ID | 5108716 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1374322 |
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| End bp | 1375233 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640502440 |
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| Product | 5-dehydro-4-deoxyglucarate dehydratase |
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| Protein accession | YP_001186712 |
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| Protein GI | 146306247 |
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| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
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| TIGRFAM ID | [TIGR03249] 5-dehydro-4-deoxyglucarate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.589934 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0261102 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCAC AAGAACTCAA GTCCATCCTC TCGTCCGGTC TGCTGTCCTT TCCGGTGACC
GATTTCGATG CCGCCGGTGA TTTCCACCAG GCCGGCTACG TACGCCGTCT CGAGTGGCTG
GCGCCCTACG GTGCCTCGGC GCTGTTCGCC GCCGGCGGCA CCGGCGAGTT CTTCTCCCTG
GCACCGGACG AATACAGCGC CGTGATCAAG ACCGCCGTGG ACACCTGCGA GAAGTCCGTG
CCCATCCTGG CCGGTGTCGG CGGCCCGACC CGCGTCGCCA TCCAGATGGC GCAGGAAGCC
GAGCGCCTGG GCGCCAAAGG CCTGCTGCTG CTGCCGCATT ACCTCACCGA AGCCTCGCAG
GAGGGCGTTG CCGCACACGT CGAGCAGGTG TGCAAGGCGG TGAAGATCGG CGTGGTGATC
TACAACCGTA ACGTCTGCCG CCTCAATGCC AACCTGCTGG AGCAGCTGGC CGAGCGCTGC
CCCAATCTGA TCGGCTACAA GGATGGCCTG GGCGACATCG AACTGATGGT GTCGATCCGT
CGCCGCCTGG GCGAGCGCCT CACCTACCTC GGCGGCCTGC CGACTGCCGA GGTCTACGCC
GCGGCCTACA AGGCCCTGGG CGTACCGGTG TATTCCTCGG CCGTGTTCAA TTTCATTCCG
AAAACCGCCA TGGCGTTCTA CAAGGCCATC GCTGCCGACG ATCAGGCCAC GGTTGGCAAG
CTGATCGACG ATTTCTTCCT GCCCTACCTG GACATCCGTA ACCGCCGTGC CGGTTATGCC
GTGAGCATCG TCAAGGCCGG TGCGAAAATC GTTGGTTACG ATGCCGGCCC GGTGCGTGCG
CCGCTGACCG ATCTGCTGCC GGAGGAGTAC GAAGCCCTGG CCAAGCTGAT CGAGGCGCAA
GGCGCGCAGT AA
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| Protein sequence | MNPQELKSIL SSGLLSFPVT DFDAAGDFHQ AGYVRRLEWL APYGASALFA AGGTGEFFSL
APDEYSAVIK TAVDTCEKSV PILAGVGGPT RVAIQMAQEA ERLGAKGLLL LPHYLTEASQ
EGVAAHVEQV CKAVKIGVVI YNRNVCRLNA NLLEQLAERC PNLIGYKDGL GDIELMVSIR
RRLGERLTYL GGLPTAEVYA AAYKALGVPV YSSAVFNFIP KTAMAFYKAI AADDQATVGK
LIDDFFLPYL DIRNRRAGYA VSIVKAGAKI VGYDAGPVRA PLTDLLPEEY EALAKLIEAQ
GAQ
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