| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1211 |
|---|
| Symbol | |
|---|
| ID | 5108712 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 1369297 |
|---|
| End bp | 1370817 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640502436 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001186708 |
|---|
| Protein GI | 146306243 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3333] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0374344 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.144663 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGAAT TACTGCAGCA AGGCTTCGGT GCCGTCTTCT CGCTCAACAT CCTGATGCTG
ATGTTCGTCG GCGTCGCCGT GGGCATCGTG TTCGGCGCGG TGCCCGGCCT CTCGGCCACC
ATGGCCGTGG CCCTGTGCCT GCCGCTGACC TTCACCATGG GCCCGCAGGC GGGTCTGTCG
CTGCTGGTGG CGCTGTTCAT CGGCGCCACC TCCGGCGGCT TGATCTCGGC GATTCTGCTG
AAGATTCCCG GCACGCCGTC ATCCATCGCC ACGGTGTTCG ACGGCGGCCC GCTGATGGAG
CAGGGCCAGG GCGTCAAGGC GCTGGGCGTG GGCATCGTGT TCTCCTTTCT CGGCACCATC
TTCAGCGTGG TGGCGCTGAT GTTCATCGCC CCGCAACTGG CCAAGGTGGC GCTGAGCTTC
GGCCCGCACG AATACTTCGC CATCGCGGTG TTTTCCCTGA CCCTGATCGC CACGCTGTCG
GCCGGCTCCA TGCTCAAGGG GCTGTTCGCC GGCGCCCTGG GCATCGCCGT GTCCACCGTC
GGCATCGCGC CGGTGGAGGC CGTGCGCCGC TTCACCTTCG GCTTCAGCGA ACTCAACGGG
GGCTTCTCCA TGCTCACCGT GATGATCGGC ATGTTCGCCG TGGCCGAAAT CATCAAGCTG
GCCGAAACCG GTCGTCATGC CGTGCAGGGC AAGGCCAAGT CGGTGAGCAT GAAGCACATC
AGGGGCTTCG GCTTCTCGCT CAAGGAGTTT CGCGAGCAAC TGCCCAATGC CGGGCGCTCC
GGGCTGATCG GCCTGGGCGT GGGCATCCTG CCGGGCATCG GCGCCGGCAC CTCCAACCTG
CTGGCCTACA TCATCTCGAA GAAACGCGCG AAGGATCCGC ACAGCTACGG CAAGGGCAAT
ATCGGCGGCG TGGTGGCCAG CGAGACCGCC AACAACGCCG GCGTCGGCGG CGCCATGATG
CCGCTGATGA CCCTGGGCAT TCCCGGCGAC ACCGTCACCG CGATCCTGCT CGGCGGCTTC
CTGATCCACG GCATCCAGCC CGGCCCGCTG CTGTTCGTCA GCCAGGGCCC GCTGGTGTAC
ACCATCTTCG CCGCGCTGAT CGTGGCCACG GTGATCATGC TGTTCATGGA GTTCTACGGC
CTGCGCCTGT TCATCAAGCT GCTCGACGTG CCCAAGCACA TCCTGCTGCC GATCATCCTG
GTGCTCTGCG TGGTCGGCGC CTTCGGCCTG TCCAGCCGCC TGTTCGACGT CTGGTCGATC
CTGCTGTTCG GCCTGCTCGG CTACGGCTTC GTCAAGGCCG GCATGCCGGC GGCGCCCTTC
ATCATCGGCT TCATCCTCGG GCCGATGGCC GAGACCAACC TGCGCCGCGG GCTGATGCTG
TCGGACAACG ACTTCATGGA CTTCGTCACC AACCCCATCG CTGGCAGTTT CCTCGGTTTG
GCCCTGGCCT TCGTGCTGTG GCAGGTGTTC AGCGCCCTGC GCCCCAGACC CAGCGCGATC
AACGAGATCC TGCGCACCTG A
|
|---|
| Protein sequence | MLELLQQGFG AVFSLNILML MFVGVAVGIV FGAVPGLSAT MAVALCLPLT FTMGPQAGLS
LLVALFIGAT SGGLISAILL KIPGTPSSIA TVFDGGPLME QGQGVKALGV GIVFSFLGTI
FSVVALMFIA PQLAKVALSF GPHEYFAIAV FSLTLIATLS AGSMLKGLFA GALGIAVSTV
GIAPVEAVRR FTFGFSELNG GFSMLTVMIG MFAVAEIIKL AETGRHAVQG KAKSVSMKHI
RGFGFSLKEF REQLPNAGRS GLIGLGVGIL PGIGAGTSNL LAYIISKKRA KDPHSYGKGN
IGGVVASETA NNAGVGGAMM PLMTLGIPGD TVTAILLGGF LIHGIQPGPL LFVSQGPLVY
TIFAALIVAT VIMLFMEFYG LRLFIKLLDV PKHILLPIIL VLCVVGAFGL SSRLFDVWSI
LLFGLLGYGF VKAGMPAAPF IIGFILGPMA ETNLRRGLML SDNDFMDFVT NPIAGSFLGL
ALAFVLWQVF SALRPRPSAI NEILRT
|
|---|
| |