| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1209 |
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| Symbol | |
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| ID | 5108710 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1366076 |
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| End bp | 1367221 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640502434 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001186706 |
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| Protein GI | 146306241 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.421019 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.31825 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGCTCC GCCGCATGCT CATCATGCTC GGCGTCGTAC TCGTCGTGGT ACTCGCCCTC
GCCGCCTACA AAGGCTTCTC CATCTATCAG CAGATCCAGA TGTTCTCGGC GCCGCAGCCG
GCCATCAGCG TTTCCGCCGC CCTGGCCGAA GAGCAGCCCT GGCAGGGCCG CCTGCCAGCC
ATCGGCACGC TCAAGGCGTT CCAGGGCGTG GACCTGGCCG CCGAAGTGGA CGGCATCGTC
AGTGCGGTGC TGTTCGAGTC CGGGCAGAAG GTCACGCTCG GCCAGCCGCT GATCCAGCTC
GACAGCGAAG TGGAACGCGC CAACCTGGCC ACCGCCGAGG CGGTGCGCAG CCTGGCGCGG
GTCGAGTTCG AGCGCGGGCG CAGCCTGGTG AGCCGGCAGA ACATCTCCAA GAGCGAGTTC
GACCGCCTCA ACGCCGAGCT GCTCAAGGCC GAGGCCACGG TCTCCCAGCT CAAGGCGCAG
TTGGACAAGA AGCGCGTGCT CGCGCCCTTC GCCGGTACCA TCGGCATCCG CCAGGTGGAC
ACCGGCGACT ACCTCTCGCC GGGCGCCGCC ATCGCCACCC TGCAGGATCT GTCGCGCCTG
CACGTCGACT TCTTCCTGCC CGAGCAGCGC GCACCGCAGC TACAGGTGGG TCAGCGCGTG
CTGGTGGGCG TGGCGGCCTA TCCGGGCGAG ACCTTCGAAG GGCAGATCGC CGCGATCAAC
CCCAAGGTGG AGAACGAGAC CCGCAACCTG CAGGTGCGCG CCACCCTGAG CAACCCGGAC
GAGAAGCTGC TGCCGGGCAT GTTTGCCAAC CTCGAGGTGC TGCTGCCGGG CGACGAGGCG
AAGATCGTGG TGCCGGAAAC CGCCATCACC TACACCCTCT ATGGCAACTC GGTGTACGTC
ATCGACGAGA AGCGCGGCGA GGATGGCCAG CCGGTCAAGG ACGAAGGCGG CAAGACGCAG
CTGACGGTCG AGCGGCGCTT CGTCGAGACC GGCGAACGGC GTGCCGGGCG CGTGGTGATC
GTCAAGGGCC TGCAGGCCGG CGAGCAGGTG GTTACCTCCG GCCAGCTCAA GCTGGACAAC
GGCGCCCATG TCGAGGTGGT CGAGGATCCG GCGCTGGCGA TCCAGGCTGC CGCCACCACG
CAATAA
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| Protein sequence | MLLRRMLIML GVVLVVVLAL AAYKGFSIYQ QIQMFSAPQP AISVSAALAE EQPWQGRLPA
IGTLKAFQGV DLAAEVDGIV SAVLFESGQK VTLGQPLIQL DSEVERANLA TAEAVRSLAR
VEFERGRSLV SRQNISKSEF DRLNAELLKA EATVSQLKAQ LDKKRVLAPF AGTIGIRQVD
TGDYLSPGAA IATLQDLSRL HVDFFLPEQR APQLQVGQRV LVGVAAYPGE TFEGQIAAIN
PKVENETRNL QVRATLSNPD EKLLPGMFAN LEVLLPGDEA KIVVPETAIT YTLYGNSVYV
IDEKRGEDGQ PVKDEGGKTQ LTVERRFVET GERRAGRVVI VKGLQAGEQV VTSGQLKLDN
GAHVEVVEDP ALAIQAAATT Q
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