| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1189 |
|---|
| Symbol | |
|---|
| ID | 5106559 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 1341311 |
|---|
| End bp | 1344226 |
|---|
| Gene Length | 2916 bp |
|---|
| Protein Length | 971 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640502412 |
|---|
| Product | multi-sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001186686 |
|---|
| Protein GI | 146306221 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAGTT CCAGCCGCTT TCCCCTGCGT CAGTGGATCT GGCGAGCGTT CGTGCAGAGC
GCGCTGATCC CGTTGATTCT GGTGGAGTCG GTACTGATCG CGGTGTATCT GCTGAGCAAT
CAGGCGATTC GCGATACGCA GATCGGCCAT CTGCAGGAGG CCGCGGTCAA GGATCTGGCC
AGCGCGGCGT TACGCGAGGG GCAGATCATC GATGGGCGTT TGCGCTCGAT CGAGTCGCTG
GTGCAGGTCT ATCGTGATGC AACCCTGCAG GCGCTGCTCG ATGATCGTTT CCAGGCCGAC
GAGCTGGAAC ACCGGCGCCA CGCCAGCACC GACAGCGGCG TGTTCTATAC CCGCAGCGAC
GATGGGCGCG CGGCTTCCTT CTATGCCAAC AGCACGCCGC GAGAGCAGCA GGACCACGCC
AAGGTCATGC GCCTGTCGCA GGTCGATCCG CTGATGCGTT CGATCAAGCA GGCCAACCCT
CTGGTGGCGG CGCTGTATTT CAACAGCTGG GACAGCTACA ACCGCATCTA CCCCTGGTTC
GATACGCCGG CCCAGTACCC TCACGACATG GTGATCCCGG ATTACAACTT CTATTACCTC
GCCGATGCCA AGCACAACCC GGAGCGCAAG GTGATGTGGA CCGAGGTCTA CCTCGATCCG
GCGGGCCTGG GCTGGATGAT GTCAGCCATC GCCCCGGTCT ACCGCGGCGA TTTCCTGGAA
GGGGTGGTGG GGCTGGATAT CACGGTGGAT CAGGTCCTGG GCGAGATCGC GGAGCTCAAC
GTGCCTTGGC AGGGCTACGC CATGCTGGTC AGCCATGACC ACAACATCAT GGCGCTGCCG
GCAGCCGGCG AGCTGGACTT CGGTCTGCGC GAGCTGACCC ACTATTCCTA CGAGGAGGCG
GTACGCCGCG AGGTGCTCAA GCCCGAGGAC TTCAATCTGA CCAAGCGCGA GGGCATGGCG
CCACTGCTGC GGGCGATGAA CGAGGAGCGC GGCAATGTCC AGGAGGTGCT GCTCGGCGGG
CGCAAGCAGC TGGTAGCCTG GAGCGAGATT CCGCAGACCG GCTGGCGTCT GCTGCTGGTG
GTGGACGAAG AGCAGATCTT CCATGAGACC AATCAGCTGG CCGAACGCTA CATGCAGATC
GGCTACCTGC TGATCGCCGG TCTGCTGGCC TTCTACCTGC TGTTCTTCGC CCTGATGTGG
CTGCGCTCGC GGCATCTCAG CAACCAGCTG GCCCGTCCCA TCGCCGGTAT CGTGGAGATG
GCCGGCAGCC TGGGACAGGG CAACTATCTG CCGGCTTCAC CGGACAGTCG CATCGCCGAG
GTCAGCCGCC TGGCCGAGGC GGTTCAGCAG GCGGGCAAGC AGCTGCGGGC CAGCGAGCTG
GAGCGTCAGG AGGCGCAGAA CAGCCTGCAG CTGGTGCTGG AGAGCACCAC CGAAAGCCTG
TGGCACATCA ATACGCAGGA CCTGACCATC GAGCTCAGCG AGCGCTTCGT GCGTCGCTTC
GGCCTGGGTG GCCGTCACCT GAGCCTCAGC GAATTCAACC AGCGCGTGCA TCCCGACGAT
CTGGAGCGGC TGCGCCATCT GCGCAAGCAC TTCGCCGAGA GCGGCGACGA GCATTTCGAT
GCCGAGTACC GCTACCTCGA CGCCAAGGGG GACTATCTGT GGCTGCTCAG CCGCGGCAAG
GTGCTGACGC GGGACGACAA TGGCTGGCCG CTGCGTATCG CCGGCACCCA CGTCGATATC
ACCAGGCTCA AGCAGGTGCA GGAAGAGCTG CGCCACGCCA GCCTCGAAGC GCTCGCCGCC
AGCCAGGCCA AGAGCCGTTT CCTGTCGAGC ATGAGCCATG AGCTGCGCAC GCCGCTCAAC
GCCATCCACG GCTTCGCCCA GCTGATCGAG ATGGAAACCC AGGACAAGGC CGATACCGGT
CCGGAGAGCG ACTACGCGCG TGAGATCGTC AATGCCAGCC GGCATCTCAC CTCTCTGGTG
GACGATATCC TCGATCTGTC GAGCATCGAG AGTCGTCGTC AGCAATTGCA GCTGCAGCCG
ATCGAGATCG GCGGTCTGCT CAACGGCTGT GCCGAGCTGG TGCTGCCCGA AGTGCAGCAG
AGGCAGTTGC AGCTACAGGT GATGGAACCT GCCCAGCCGC CGCTGTTCGT GCAGGGTGAC
CCGCGCCGGG TGCGGCAGAT TCTGCTCAAT CTGCTTTCCA ACGCGATCAA GTACAACAGC
CCGCGCGGGA TGATCCGCAT GGGGTATGAG GTGCGTGCCG ACTGTGTGCG CCTGTGGGTC
GATGACACCG GGCCGGGGCT TTCCACCGAG CAGCAGGCGC AGCTGTTCCA GCCGTTTCAG
CGTCTCGGTC GGGAGAGTTC CAACATCCCC GGCACCGGCA TCGGCCTGGT GCTGTGCCGG
GAACTGGCCA GCCTGATGGA AGGCGAGATC GGTCTGCGCA GCGAGCCGGG AGTGGGCAGC
CGCTTCTGGC TCGATCTGCC CAGCGCCGCC AGCCCGGAGG GCGAGGCCAG CGATGCTGCA
GACGAGCCCG CCCAGCCGCG TCAGCGCCTG GTGCAGGTGC TGTGCGTGGA GGACCATCCG
GCCTGCATGA AAATCCTGCA GGCTTCCCTG CGCGAGTTCG CCGAAGTGCG CGGCGTGAGC
TCGTGCCAGC GAGCCCTGGC CGAACTGCAG AGCAGCGAGC CGGCCCTGGT CTTGCTGGAT
ATCGATCTGC CCGATGGCAG CGGACTGGAG GTGCTGGACA GCATGCGTGC CGATCCCCGG
CTACGCGAGA TACCGGTGTT GGTGATCAGT GCCGTGGCCG ACGCCCGTCT GTTCGAGGAC
GCCCGCGCGC GCGGCGCTTC GGCCTGTCTG AGCAAACCGG TGGATCTGCA GGAGGTGCGT
CAGGTCGCGC TGGGCTTGCT GTACAGCGGC TATTGA
|
|---|
| Protein sequence | MPSSSRFPLR QWIWRAFVQS ALIPLILVES VLIAVYLLSN QAIRDTQIGH LQEAAVKDLA
SAALREGQII DGRLRSIESL VQVYRDATLQ ALLDDRFQAD ELEHRRHAST DSGVFYTRSD
DGRAASFYAN STPREQQDHA KVMRLSQVDP LMRSIKQANP LVAALYFNSW DSYNRIYPWF
DTPAQYPHDM VIPDYNFYYL ADAKHNPERK VMWTEVYLDP AGLGWMMSAI APVYRGDFLE
GVVGLDITVD QVLGEIAELN VPWQGYAMLV SHDHNIMALP AAGELDFGLR ELTHYSYEEA
VRREVLKPED FNLTKREGMA PLLRAMNEER GNVQEVLLGG RKQLVAWSEI PQTGWRLLLV
VDEEQIFHET NQLAERYMQI GYLLIAGLLA FYLLFFALMW LRSRHLSNQL ARPIAGIVEM
AGSLGQGNYL PASPDSRIAE VSRLAEAVQQ AGKQLRASEL ERQEAQNSLQ LVLESTTESL
WHINTQDLTI ELSERFVRRF GLGGRHLSLS EFNQRVHPDD LERLRHLRKH FAESGDEHFD
AEYRYLDAKG DYLWLLSRGK VLTRDDNGWP LRIAGTHVDI TRLKQVQEEL RHASLEALAA
SQAKSRFLSS MSHELRTPLN AIHGFAQLIE METQDKADTG PESDYAREIV NASRHLTSLV
DDILDLSSIE SRRQQLQLQP IEIGGLLNGC AELVLPEVQQ RQLQLQVMEP AQPPLFVQGD
PRRVRQILLN LLSNAIKYNS PRGMIRMGYE VRADCVRLWV DDTGPGLSTE QQAQLFQPFQ
RLGRESSNIP GTGIGLVLCR ELASLMEGEI GLRSEPGVGS RFWLDLPSAA SPEGEASDAA
DEPAQPRQRL VQVLCVEDHP ACMKILQASL REFAEVRGVS SCQRALAELQ SSEPALVLLD
IDLPDGSGLE VLDSMRADPR LREIPVLVIS AVADARLFED ARARGASACL SKPVDLQEVR
QVALGLLYSG Y
|
|---|
| |