| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1176 |
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| Symbol | |
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| ID | 5108677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1324725 |
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| End bp | 1325990 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640502398 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001186673 |
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| Protein GI | 146306208 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.771785 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAAGA AACTTGGTGT TGCCATCGCG GCGGCCCTGA CCTTGGGGTT CGTCGGTGGT
GCGTTGTTTT ATAACAGCGG GCGCTTTGCC GCAGAAATCG GGCACATGCT TGCCAGTAGC
GACAGCGTTG TTGCAGTCAG GGCTGGGCAG GTCAGTGAGG CCGGGGACGA TCATGCCGAT
GATGATCATG GCGAGGCTGG CGATGATCAC GGTGAGTCCG CGGGTGGGCA TGCCGAAGAG
GGGGGGCTGG TGCTGAGTGA GGCGCAAATA GCCGCTGCGG GCATTGAACT CGTCGACGTA
CAAGCGCGCG CCATGAGCAC ATACATCTCT CTACCTGGCG AGGTGAATTT CGACGAGGAG
CGCACGGCTC ATGTCGTGCC GCCCAGCGCT GGCGTTGTCG AGCGCGTGCT GGTCGGGCTG
GGGCAGAAGG TGGCTGCTGG GGATGGCCTG GCGACTATCG TCAGTCAGCA GGTTTCCGAG
TTGCGTAGTG AAATGGCGGC TGCCGCTCGA CGCGTTGAGC TGGCCCGCAC GACCTTCGAG
CGTGAACGCC AATTGTGGAA GGACGGTATT TCGGCCGAGC AGGATTATCT CCAGGCCCGG
CAAACGCTGC AGGAGGCCGA GATCGCTCTG GCCAATGCCC GACAGAAGGG CAAGACGATC
AGCCCTCAGG GCGAGGCTGG CGATGGCAGC CGTTACAACC TGCGTGCACC TTTTTCCGGT
GTGGTGGTGG AGAAGCACCT GGTACCTGGC GAAGTCGTCA GTGAGACCAG TAATGCCTTC
ACGGTGGCTG ATCTGAGTCG CGTCTGGGTC ACCTTCAGCG TTTCCCCGCG TGATCTGGAA
CAGGTGAAAG TCGGGCAGTC AGTACGTGTC AGTGCGCCAG AGTTGGGGCG CGAAGCTACG
GGTAAGGTGG CTTACATCAG CCGCCTGCTG GGTGAGCAGA CGCGGACGGC GACAGGCCGC
ATCGACCTGG ATAACGCCGA CGGCATTTGG CGTCCCGGCC TGTTCGTCTC GGTTGCCTTG
GCGACTGAAA GCCATGAGGC CGGGGCCGTG GTGCCGGCTT CATCGATTCA GGATGTCGAG
GACAAGACCA GTGTCTTCGT GCGTACCGCT GAAGGCTTCG AAGTGCGTCC GGTGACATTG
GGCACCCGCA GCGATGGCTT CGTCGAGGTA CGCGAAGGCC TGAAGTCAGG CGAACGTGTA
GCTGCCACAG GCAGTTTCAT CCTCAAGTCC GAACTGGGCA AAGGCAGCGC CGAACACGCG
CACTGA
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| Protein sequence | MQKKLGVAIA AALTLGFVGG ALFYNSGRFA AEIGHMLASS DSVVAVRAGQ VSEAGDDHAD
DDHGEAGDDH GESAGGHAEE GGLVLSEAQI AAAGIELVDV QARAMSTYIS LPGEVNFDEE
RTAHVVPPSA GVVERVLVGL GQKVAAGDGL ATIVSQQVSE LRSEMAAAAR RVELARTTFE
RERQLWKDGI SAEQDYLQAR QTLQEAEIAL ANARQKGKTI SPQGEAGDGS RYNLRAPFSG
VVVEKHLVPG EVVSETSNAF TVADLSRVWV TFSVSPRDLE QVKVGQSVRV SAPELGREAT
GKVAYISRLL GEQTRTATGR IDLDNADGIW RPGLFVSVAL ATESHEAGAV VPASSIQDVE
DKTSVFVRTA EGFEVRPVTL GTRSDGFVEV REGLKSGERV AATGSFILKS ELGKGSAEHA
H
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