Gene Pmen_1174 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1174 
Symbol 
ID5108675 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1322346 
End bp1323020 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content58% 
IMG OID640502396 
Producttwo component heavy metal response transcriptional regulator 
Protein accessionYP_001186671 
Protein GI146306206 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID[TIGR01387] heavy metal response regulator 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.216853 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGAATCC TGATTGTTGA GGACGAGCTT AAAACTGCCG AATATCTCCA CCAGGGACTT 
ACCGAGAGCG GCTATGTCGT CGATATTGCC ACCAATGGTG TCGACGGCTT GCACATGGCG
GCCCAAGCGT CCTACGAATT GATCATCCTT GATGTCGACT TACCAGAGAT CGATGGCTGG
GGCGTACTGG CCAGCATTCG CCGTAATAGT CGCACCCCTG TGATGATGCT GACGGCACGC
GGGCGCCTGG CCGACAAGCT CAAAGGTTTC GACTCCGGTG CCGACGACTA TCTGGTGAAG
CCATTCGAGT TCCCCGAGCT TCTGGCCAGA GTTCGCTCGC TGCTACGAAG AGGTGAACAG
GTCAGCGCGC CAGACGTGCT CAAGGTCGAC GACCTTGAGC TGGATCCAGC CCGCCACCGC
GCCTATCGCA ATGGTCAACG AATCGATCTG ACCACCAAGG AGTTCGCTCT GCTGCACCTG
CTGATGCGAC GCAGCGGCGA AGTACTCTCG CGCACCCAGA TCATCTCGCT GGTCTGGGAC
ATGAACTTCG ACTGTGATAC CAACGTCGTC GAAGTTTCCA TCCGGCGCTT GCGCGCCAAG
ATCGACGACC CTTTCGAGAA CAAACTGATC CACACCTTGC GCGGCGTCGG CTATGTACTG
GAGGCTCGTC AATGA
 
Protein sequence
MRILIVEDEL KTAEYLHQGL TESGYVVDIA TNGVDGLHMA AQASYELIIL DVDLPEIDGW 
GVLASIRRNS RTPVMMLTAR GRLADKLKGF DSGADDYLVK PFEFPELLAR VRSLLRRGEQ
VSAPDVLKVD DLELDPARHR AYRNGQRIDL TTKEFALLHL LMRRSGEVLS RTQIISLVWD
MNFDCDTNVV EVSIRRLRAK IDDPFENKLI HTLRGVGYVL EARQ