Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1174 |
Symbol | |
ID | 5108675 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 1322346 |
End bp | 1323020 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640502396 |
Product | two component heavy metal response transcriptional regulator |
Protein accession | YP_001186671 |
Protein GI | 146306206 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | [TIGR01387] heavy metal response regulator |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.216853 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGAATCC TGATTGTTGA GGACGAGCTT AAAACTGCCG AATATCTCCA CCAGGGACTT ACCGAGAGCG GCTATGTCGT CGATATTGCC ACCAATGGTG TCGACGGCTT GCACATGGCG GCCCAAGCGT CCTACGAATT GATCATCCTT GATGTCGACT TACCAGAGAT CGATGGCTGG GGCGTACTGG CCAGCATTCG CCGTAATAGT CGCACCCCTG TGATGATGCT GACGGCACGC GGGCGCCTGG CCGACAAGCT CAAAGGTTTC GACTCCGGTG CCGACGACTA TCTGGTGAAG CCATTCGAGT TCCCCGAGCT TCTGGCCAGA GTTCGCTCGC TGCTACGAAG AGGTGAACAG GTCAGCGCGC CAGACGTGCT CAAGGTCGAC GACCTTGAGC TGGATCCAGC CCGCCACCGC GCCTATCGCA ATGGTCAACG AATCGATCTG ACCACCAAGG AGTTCGCTCT GCTGCACCTG CTGATGCGAC GCAGCGGCGA AGTACTCTCG CGCACCCAGA TCATCTCGCT GGTCTGGGAC ATGAACTTCG ACTGTGATAC CAACGTCGTC GAAGTTTCCA TCCGGCGCTT GCGCGCCAAG ATCGACGACC CTTTCGAGAA CAAACTGATC CACACCTTGC GCGGCGTCGG CTATGTACTG GAGGCTCGTC AATGA
|
Protein sequence | MRILIVEDEL KTAEYLHQGL TESGYVVDIA TNGVDGLHMA AQASYELIIL DVDLPEIDGW GVLASIRRNS RTPVMMLTAR GRLADKLKGF DSGADDYLVK PFEFPELLAR VRSLLRRGEQ VSAPDVLKVD DLELDPARHR AYRNGQRIDL TTKEFALLHL LMRRSGEVLS RTQIISLVWD MNFDCDTNVV EVSIRRLRAK IDDPFENKLI HTLRGVGYVL EARQ
|
| |