Gene Pmen_1150 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1150 
Symbol 
ID5108123 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1295525 
End bp1296778 
Gene Length1254 bp 
Protein Length417 aa 
Translation table11 
GC content67% 
IMG OID640502374 
Productextracellular solute-binding protein 
Protein accessionYP_001186649 
Protein GI146306184 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0392592 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value0.752071 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCGA TCTCTCGCCT GTCCACCGCC ATCTCCCTCG CTGTCCTGTT GCCCCTGTCC 
GCTACCGCCG GTGAAGTCGA AGTGCTGCAC TGGTGGACGT CCGGTGGTGA AAAACGCGCC
GCCGATACCC TGCAGAAGCT GGTCGAGGCC CAGGGCCACA AATGGAAGGA CTTCGCCGTT
GCCGGTGGCG GTGGCGAAGC GGCCATGACC GTGCTGAAGA CCCGCGCCGT GTCCGGCAAC
CCGCCTGCCG CCGCGCAGAT CAAGGGCCCG GACATCCAGG AGTGGGGCGA GCTGGGCCTG
CTCGCCGATC TCAATGGCGT CGCCGCCGAG CAGAAATGGG ATGACCTGCT GCCACCGCAG
GTGGTCGAGG TGATGAAGTA CCAGGGCGAC TACGTGGCGG TACCGGTCAA CGTGCACCGG
GTCAACTGGC TGTGGATCAA CCCACAAGTG TTCGAGAAGG CGGGTGCCAC GCCGCCGACC
ACCCTCGACG AATTCTTCGC CGCCGCCGAC AAGCTCAAGG CGGCCGGCTT CATCGCCATC
GCCCACGGCG GCCAGCCCTG GCAGGACGGC ACCGTGTTCG AGGACCTGGC CTTCAGCATT
CTCGGCGCCG AGGGCTTTCG CAAGGCCTTC GTCGAGCAGG ACCGCGCCAC CCTGACCGGC
GACAAGATGG TCGAGGTGTT CGCCGCCCTG CAGAAGCTGC GCGGCTACAT CGACGCCGAC
GCCGCCGGGC GCGACTGGAA CAGCGCCACC GGCATGGTGA TCGACGGCAA GGCCGGCATG
CAGATCATGG GCGACTGGGC CAAGAGCGAG TGGACCGCCG CCGGCAAGGT CGCCGGCAAG
GACTACGAAT GCCTGGCCTT CCCCGGCACC CAGGGCAGCT TCGCCTTCAA CATCGACTCG
CTGGCCATGT TCAAGCTGAG CAACGCCGAG AACCGCAAGG CCCAGGAAGA CCTGGCGCGC
ACGGTGATGG GCAACGAGTT CCAGGAGTTC TTCAACCAGA ACAAGGGTTC GATCCCGGTG
CGCATGGACC AGGACATGAG CAGCTTCGAC GCCTGCGCGC AGAAGTCCAT GGCCGACTTC
AAGGACGCCG CCGCCGGTGG CGGTCTGCAG CCGAGCCTGG CCCACGGCAT GGCCGCTTCC
AGCTACGTGC AGGGCGCGGT GTTCGACGTG GTGACCAACT TCTTCAACGA CCCCAAGGCC
GACCCCAAGC GCGCCGCCCA GCAGTTGGCG GCGGCGATTC AGGCGGTGCA GTGA
 
Protein sequence
MKAISRLSTA ISLAVLLPLS ATAGEVEVLH WWTSGGEKRA ADTLQKLVEA QGHKWKDFAV 
AGGGGEAAMT VLKTRAVSGN PPAAAQIKGP DIQEWGELGL LADLNGVAAE QKWDDLLPPQ
VVEVMKYQGD YVAVPVNVHR VNWLWINPQV FEKAGATPPT TLDEFFAAAD KLKAAGFIAI
AHGGQPWQDG TVFEDLAFSI LGAEGFRKAF VEQDRATLTG DKMVEVFAAL QKLRGYIDAD
AAGRDWNSAT GMVIDGKAGM QIMGDWAKSE WTAAGKVAGK DYECLAFPGT QGSFAFNIDS
LAMFKLSNAE NRKAQEDLAR TVMGNEFQEF FNQNKGSIPV RMDQDMSSFD ACAQKSMADF
KDAAAGGGLQ PSLAHGMAAS SYVQGAVFDV VTNFFNDPKA DPKRAAQQLA AAIQAVQ