| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1140 |
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| Symbol | |
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| ID | 5108113 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1284745 |
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| End bp | 1285443 |
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| Gene Length | 699 bp |
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| Protein Length | 232 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640502364 |
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| Product | 3-oxoacid CoA-transferase, A subunit |
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| Protein accession | YP_001186639 |
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| Protein GI | 146306174 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
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| TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.373341 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGGAC TCGACAAACG CGTCGGCAGC TATGCAGAAG CCCTGGACGG CCTGCAGGAC
GGCATGACCC TACTGGCCGG CGGTTTCGGC CTGTGCGGCA TCCCCGAGAA CCTGATCAAG
GAGATCCGCC GCCGTGGCGT GCGCGATCTG ACCGTGGTGT CCAACAACTG CGGCGTCGAT
GGCTTCGGCC TCGGCGTGCT GCTGGAAGAC CGGCAGATCC GCAAGATGAT CGCCTCCTAC
GTCGGCGAGA ACGCCCTGTT CGAGCAGCAG CTGCTGTCCG GCGAGCTGGA AGTCGAACTG
ACCCCGCAGG GCACCCTGGC CGAGAAGCTG CGCGCCGGCG GCGCCGGTAT TCCCGCCTTC
TTCACCGCCA CCGGCTACGG CACCCCGGTC GCCGAGGGCA AGGAGGCGCG CGAGATCAAC
GGCCGCCACT ACATCCTCGA ACCGGCCATC ACCGGCGACT TCGCCATCGT CAAGGGCTGG
AAGGCCGACC ACTTCGGCAA CGTGGTCTAC CGCCACACCG CGCAGAACTT CAACCCGGTG
GTGGCCACCG CCGGACGCAT CACCGTGGTC GAGGTCGAGG AGATCGTCGA GCCCGGTGAA
CTCGACCCGA CGCAGATTCA CACCCCCGGC ATCTATGTCG ACCGGCTGAT CTGCGGCAGC
TTCGAGAAAC GCATCGAAAA ACGCACCCTG CGCAGCTGA
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| Protein sequence | MSGLDKRVGS YAEALDGLQD GMTLLAGGFG LCGIPENLIK EIRRRGVRDL TVVSNNCGVD
GFGLGVLLED RQIRKMIASY VGENALFEQQ LLSGELEVEL TPQGTLAEKL RAGGAGIPAF
FTATGYGTPV AEGKEAREIN GRHYILEPAI TGDFAIVKGW KADHFGNVVY RHTAQNFNPV
VATAGRITVV EVEEIVEPGE LDPTQIHTPG IYVDRLICGS FEKRIEKRTL RS
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