| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1138 |
|---|
| Symbol | |
|---|
| ID | 5108111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 1282716 |
|---|
| End bp | 1283897 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640502362 |
|---|
| Product | acetyl-CoA acetyltransferase |
|---|
| Protein accession | YP_001186637 |
|---|
| Protein GI | 146306172 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
|---|
| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.495494 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGACG TCGTTATCGT CGCCGCCACT CGCACCGCCA TCGGCAGCTT CCAGGGCAGC
CTGGCGGAGA TTCCCGCGCC CGAACTCGGC GCCATCGTCA TCAAGCGCCT GCTGGAGCAG
ACCGGCCTCG ATGCCGCCCA GGTCGATGAA GTCATCCTCG GCCAGGTGCT CACTGCTGGC
TCCGGGCAGA ACCCCGCACG CCAGGCCGCC ATCCGCGCCG GCCTGCCCCA TGCCGTACCG
GCCATGACCC TGAACAAGGT CTGCGGCTCG GGTTTGAAAG CCCTGCACCT GGCCACCCAG
GCCATTCGCT GCGGCGATGC CGAGGTGGTG ATCGCCGGCG GCATGGAGAA CATGAGCCTG
GCGCCCTATG TACTGCCCAA GGCGCGCACC GGCCTGCGCA TGGGCCACGC TCAGCTACAG
GACAGCATGA TCCTCGACGG CCTGTGGGAT GCCTTCAACG ACTACCACAT GGGCATCACC
GCCGAAAATC TGGTGGAGAA GTACGGCATC AGCCGTGAAG CCCAGGACGC CTTCGCTGCC
GCCTCGCAGC GCAAAGCCGT GGCCGCCATC GAGTCCGGTC GTTTCGACAC AGAAATCACC
CCGGTACTGA TTCCGCAGCG CAAGGGCGAT CCTGTCGCCT TCGCCCGTGA TGAGCAGCCG
CGCGCCGGCA CCACCGCCGA ATCCCTGGCC AAGCTCAAGC CGGCGTTCAA AAAGGACGGG
AGCGTCACCG CCGGCAACGC CTCCAGCCTC AACGACGGCG CCGCTGCCGT GCTGCTGATG
AGCGCGAGCA AGGCGCAATC GCTCGGCCTG CCGGTGCTGG CGAAGATTGC CGGCTACGCC
AATGCCGGCG TCGACCCGGC GATCATGGGT ATCGCCCCGG TGTCCGCCAC CCGCCGCTGC
CTGGACAAGG CCGGCTGGAG CCTGGCCGAT CTGGACCTGA TCGAAGCCAA CGAGGCCTTT
GCTGCGCAGG CATTGTCGGT TGGCCAGGAG CTGGGCTGGG ATGCCGACAA GGTCAACGTC
AACGGCGGCG CCATCGCCCT GGGCCACCCC ATTGGCGCCT CGGGCTGCCG CGTGCTGGTG
ACGCTGTTGC ACGAGATGAT CAAGCGCGAC GCGAAGAAAG GTCTGGCCAC CCTGTGCATC
GGCGGCGGTC AGGGTGTGGC GCTGGCCATC GAGCGCAATT AA
|
|---|
| Protein sequence | MQDVVIVAAT RTAIGSFQGS LAEIPAPELG AIVIKRLLEQ TGLDAAQVDE VILGQVLTAG
SGQNPARQAA IRAGLPHAVP AMTLNKVCGS GLKALHLATQ AIRCGDAEVV IAGGMENMSL
APYVLPKART GLRMGHAQLQ DSMILDGLWD AFNDYHMGIT AENLVEKYGI SREAQDAFAA
ASQRKAVAAI ESGRFDTEIT PVLIPQRKGD PVAFARDEQP RAGTTAESLA KLKPAFKKDG
SVTAGNASSL NDGAAAVLLM SASKAQSLGL PVLAKIAGYA NAGVDPAIMG IAPVSATRRC
LDKAGWSLAD LDLIEANEAF AAQALSVGQE LGWDADKVNV NGGAIALGHP IGASGCRVLV
TLLHEMIKRD AKKGLATLCI GGGQGVALAI ERN
|
|---|
| |