Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1110 |
Symbol | putA |
ID | 5108083 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 1247558 |
End bp | 1251493 |
Gene Length | 3936 bp |
Protein Length | 1311 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640502334 |
Product | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_001186609 |
Protein GI | 146306144 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0506] Proline dehydrogenase [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.471549 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTACCA CCACCCTCGG CGTAAAACTC GACGATGCCA CCCGCGAGCG CCTGAAGAAG GCCGCTGCGC AGATCGACCG TACGCCGCAC TGGATGATCA AGCAGGCGAT CTTCAATTAT CTGGAGCAGG TCGAGAGTGG CCTGACGCCC GCCGAGCATG CCGGCCTGGC CGCTGCCGCC GGCGAGGAAG CCCTGGAGTC GCTGACCGAG CAGGGTCTGC AGGTGTTCCT CGACTTCGCC GAGAGCATCC TGCCGCAGTC GGTACTGCGC GCCGCCATCA CCAGCGCCTA CCGTCGCCCG GAAACCGAAG TGGTGCCGAT GCTGCTGGAG CAGGCGCGCC TGAACCCGCA GCAGGCCGAG GCCTCGCAGA AGCTGGCGCT GGGCATCGCC GAGAAGCTGC GCAACCAGAA GAACGCCAGC GGCCGTCAGG GCCTGGTGCA GGGCCTGTTG CAGGAGTTCT CGCTGTCGTC GCAGGAAGGC GTGGCGCTGA TGTGCCTGGC CGAAGCCCTG CTGCGCATCC CCGACAAGGC CACCCGCGAC GCGCTGATCC GCGACAAGAT CGCCAACGGC AACTGGAGCC AGCACCTCGG CCAGAGCCCG TCGATGTTCG TCAACGCGGC CAGCTGGGGC CTGCTGATCA CCGGCAAGCT GGTGTCCACC CACAACGAGG CCGGCATGAC CTCGGCGCTC AATCGCATCA TCGGCAAGAG CGGCGAGCCG GTGATCCGCA AGGGCGTGGA CATGGCCATG CGCCTGATGG GCGAGCAGTT CGTCACCGGC GAGACCATCG CCGAAGCCCT GGCCAACGCC GCCAATCTGG AGGCCAAGGG CTTCCGCTAC TCCTACGACA TGCTCGGTGA AGCCGCGCTG ACCGAGGAAG ATGCCAAGCG CTACCTGGCC TCCTACGAGC AGGCCATCCA CGCCATCGGC AAGGCCTCGC ACGGTCGTGG CATCTATGAA GGCCCGGGCA TCTCGATCAA GCTCTCCGCC CTGCACCCGC GCTACAGCCG CGCCCAATAC GAGCGCGTGA TGGACGAGCT GTACCCGACC CTGCTGGGCC TGACCCAGCT GGCCAAGCAG TACGACATCG GCATCAACGT CGACGCCGAG GAAGCCGACC GCCTGGAGCT GTCGCTGGAC CTGCTCGAGC GCCTGTGCTT CGAGCCCTCC CTGGCCGGCT GGAACGGCAT CGGCTTCGTC ATCCAGGCCT ACCAGAAGCG CTGCCCGTAC GTGATCGACT ACGTCATCGA CCTGGCCAAG CGCAGCCGTC ATCGCCTGAT GATCCGCCTG GTCAAGGGCG CCTACTGGGA CAGCGAGATC AAGCTGGCTC AGGTCAACGG CCTGGAAGGC TACCCGGTGT ACACCCGCAA GCCGTACACC GACGTGTCCT ACATCGCCTG TGCGCGCAAG CTGCTGGCTG CGCCGGAAGC CATCTACCCG CAGTTCGCCA CCCACAACGC CCACTCGCTG TCGGCCATCT ACCACCTGGC CGGGCAGAAC TACTACCCGG GCCAGTACGA GTTCCAGTGC CTGCACGGCA TGGGCGAACC GCTGTACGAG CAGGTGGTGG GCAAGGTCGC CGACGGCAAG CTGAACCGTC CGTGCCGCAT CTACGCGCCG GTGGGCAGCC ACGAAACCCT GCTGGCCTAC CTGGTACGCC GCCTGCTGGA AAACGGCGCC AACACCAGCT TCGTCAACCG CATCGCCGAC CACAGCATCT CGCTCAAGGA TCTGGTTCTC GACCCGGTGC AGCAGGTCGA GCAGATGGCC GCACAGGAAG GCGCCGTCGG TCTGCCGCAC CCGCGCATCG CGCTGCCGCG CGACCTGTAC GGCAAGGAGC GGGTCAACTC CTCGGGCCTG GATCTGGCCA ACGAACATCG CCTCGGCTCG CTGTCCTCGG CACTGCTGTC CACCGTCAAC CACAGCTACC TGGCCGAGCC GATGCTCGGT TGCGATGGCG CCAACCCGGG CGAGCCGGAG CCGGTACGCA ACCCGGCCGA CCATCGCGAC CTGGTCGGCC ATGTGCGCGA AGCCAGCGTT GCCGACGTCG ACAGCGCCCT ACTCTGCGCC CTGGCCAGTG GGCAGATCTG GCAATCCACC CTGCCGGCCG AACGCGCCGC CGTACTGGAG CGCGCCGCCG ACCTGATGGA GGCCGAGCTG CAGCAACTGA TGGGCCTCTT GGTGCGCGAG TCCGGCAAGA CCTTCGCCAA CGCCATCGCC GAAGTGCGCG AGGCGGTGGA CTTCCTGCGT TATTACGCGA TCCAGGCGCG CAGCTTCGGC AACGACAGCC ACCGCCCGCT GGGCCCGGTG GTGTGCATCA GCCCGTGGAA CTTCCCCCTG GCGATCTTCA CCGGCCAGGT CTGCGCCGCG CTGGCCGCCG GCAACACCGT GCTGGCCAAG CCGGCCGAGC AGACCCCGCT GATCGCCGCC CAGGCCGTGC GCATCCTGCG CGAGGCCGGC GTACCGGCTG GCGCCGTGCA ACTGCTGCCG GGCCGTGGCG AAACCGTCGG TGCGCGCCTG GTGGGTGACG AGCGTGTGCG CGGGGTGATG TTCACCGGTT CCACCGAGGT GGCCGGCATC CTCCAACGCA ATATCGCCGG GCGCCTGGAT GCCCAGGGCC GCACCATTCC GCTGATCGCC GAGACCGGCG GTCTCAACGC CATGATCGTC GACTCCTCGG CGCTGACCGA GCAGGTGGTG ATGGACGTGG TCGCCTCCGC CTTCGACAGC GCCGGCCAGC GCTGCTCGGC CCTGCGCGTG CTGTGCGTGC AGGACGACGT GGCCGATCGC GTGCTGACCA TGCTCAAGGG CGCCATGGCC GAATACAGCC TCGGCAACCC GGAGCGCCTG AACACCGACA TCGGCCCGGT GATCGACGCC GAGGCCAAGG CCGGCATCGA AACCCACATC GCCAAGCTGC GCGAAAAAGG CCGCAAGGTC ACCCAACTGG CGCGCGTCAA CGGCGAGGAG ATCAAGCGTG GCACCTTCGT CGTGCCGACC TTGATCGAGC TGGACAGCTT CGACGAGATG AAGCGCGAGA TCTTCGGCCC GGTGCTGCAC GTGGTGCGCT ACGCCCGTGC CGATCTGGGC AAGCTGCTGC AGCAGATCAA CGACAGCGGC TACGGCCTGA CCCTCGGCGT GCACACCCGC ATCGACGAGA CCATCGCCCA GGTGGTGAGC ACGGCCAAGG TCGGCAACCT GTACGTGAAC CGCAACATGG TCGGCGCCGT GGTCGGCGTG CAGCCGTTCG GTGGTGAAGG TCTGTCCGGC ACCGGCCCGA AAGCCGGCGG CCCGCTGTAC CTGTATCGCC TGCTGTCGAC CCGCCCGCAG GAGGCCGTCG CCCAGTACCT GCAACAGGCC GAGGTGCAGA CCCTGCCGGT TCCGAGCGAG CTGGACAAGG TGCGCACCGC CTTCGCCGAG TGGGCGAGCA AGCAGGAGCC AGGCATCGCC GCGCTGTTCG AGCAGTACCG CACGCTGTCG CAGAGCTACA GCAGCCACAC GCTGACCGGC CCGACCGGCG AGCGCAACAG CTACAGCCTG CTGCCGCGCG AGCGCGTGCT CAACCTGGCC GACGAGCGCA GCGACCTGCT GGCCCAGCTG GCCGCCACCC TGGCGGTGGG TAGCCAGGCG ATCTGGCTGG AGAGCCAGCG CACGCTGCAC GCCGAACTGC CGAAGGAAGT GCAGAAGCAC ATCCAGCTGG TGGCCGACTG GAACAGCATC GACGTGGAGC TGGACGCCAT CCTGCACCAC GGCGATTCCG ACCAGCTGCG CGCGGTGAGC GAGCAGGCGG CGCAGCGCAA GGGCGCCATC GTCGGCGTGC ACGGGCTGAA CAAGGGCGAG ACCGACATCC CGCTGGAGCG CCTGCTGATC GAACACGCCC TGAGCGTCAA CACCGCGGCC GCCGGCGGTA ACGCCAGCCT GATGACCATC GGCTGA
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Protein sequence | MATTTLGVKL DDATRERLKK AAAQIDRTPH WMIKQAIFNY LEQVESGLTP AEHAGLAAAA GEEALESLTE QGLQVFLDFA ESILPQSVLR AAITSAYRRP ETEVVPMLLE QARLNPQQAE ASQKLALGIA EKLRNQKNAS GRQGLVQGLL QEFSLSSQEG VALMCLAEAL LRIPDKATRD ALIRDKIANG NWSQHLGQSP SMFVNAASWG LLITGKLVST HNEAGMTSAL NRIIGKSGEP VIRKGVDMAM RLMGEQFVTG ETIAEALANA ANLEAKGFRY SYDMLGEAAL TEEDAKRYLA SYEQAIHAIG KASHGRGIYE GPGISIKLSA LHPRYSRAQY ERVMDELYPT LLGLTQLAKQ YDIGINVDAE EADRLELSLD LLERLCFEPS LAGWNGIGFV IQAYQKRCPY VIDYVIDLAK RSRHRLMIRL VKGAYWDSEI KLAQVNGLEG YPVYTRKPYT DVSYIACARK LLAAPEAIYP QFATHNAHSL SAIYHLAGQN YYPGQYEFQC LHGMGEPLYE QVVGKVADGK LNRPCRIYAP VGSHETLLAY LVRRLLENGA NTSFVNRIAD HSISLKDLVL DPVQQVEQMA AQEGAVGLPH PRIALPRDLY GKERVNSSGL DLANEHRLGS LSSALLSTVN HSYLAEPMLG CDGANPGEPE PVRNPADHRD LVGHVREASV ADVDSALLCA LASGQIWQST LPAERAAVLE RAADLMEAEL QQLMGLLVRE SGKTFANAIA EVREAVDFLR YYAIQARSFG NDSHRPLGPV VCISPWNFPL AIFTGQVCAA LAAGNTVLAK PAEQTPLIAA QAVRILREAG VPAGAVQLLP GRGETVGARL VGDERVRGVM FTGSTEVAGI LQRNIAGRLD AQGRTIPLIA ETGGLNAMIV DSSALTEQVV MDVVASAFDS AGQRCSALRV LCVQDDVADR VLTMLKGAMA EYSLGNPERL NTDIGPVIDA EAKAGIETHI AKLREKGRKV TQLARVNGEE IKRGTFVVPT LIELDSFDEM KREIFGPVLH VVRYARADLG KLLQQINDSG YGLTLGVHTR IDETIAQVVS TAKVGNLYVN RNMVGAVVGV QPFGGEGLSG TGPKAGGPLY LYRLLSTRPQ EAVAQYLQQA EVQTLPVPSE LDKVRTAFAE WASKQEPGIA ALFEQYRTLS QSYSSHTLTG PTGERNSYSL LPRERVLNLA DERSDLLAQL AATLAVGSQA IWLESQRTLH AELPKEVQKH IQLVADWNSI DVELDAILHH GDSDQLRAVS EQAAQRKGAI VGVHGLNKGE TDIPLERLLI EHALSVNTAA AGGNASLMTI G
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