Gene Pmen_1109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1109 
Symbol 
ID5108082 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1245675 
End bp1247102 
Gene Length1428 bp 
Protein Length475 aa 
Translation table11 
GC content65% 
IMG OID640502333 
Productarginine/ornithine antiporter 
Protein accessionYP_001186608 
Protein GI146306143 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0531] Amino acid transporters 
TIGRFAM ID[TIGR00905] transporter, basic amino acid/polyamine antiporter (APA) family 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.28189 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGACT CGTCACAAAA ACTGCGCCTG GCTGCACTGG TCGCCCTGGT CGTCGGCTCC 
ATGGTCGGCG GCGGTATCTT CTCCCTGCCG CAGAACATCG CCGCCAGCGC CAGCGCCGGC
GCCACGCTGA TCGGCTGGTT GATCACCGGG GTGGGCATGC TGACCCTGGC CTTCGTGTTC
CAGACCCTGG CCAACCGCAA GCCCGAACTC GACGGCGGGG TCTACGCCTA CGCCAAGGCC
GGCTTCGGCG ACTACATGGG TTTCTCCTCG GCCTGGGGCT ACTGGATCAG CGCCTGGATC
GGCAACGTCA GCTACATGGT GCTGCTGTTC TCCACCCTGG GTTACTTCTT CCCCGTGTTC
GGCGAGGGCA ACACCCTGCC GGCGGTGATC TGCGCCTCGG TGCTGCTCTG GCTGCTGCAC
TTTCTGGTGC TGCGCGGAAT CAAGGAGGCG GCCTTTATCA ACACGGTGAC CACGGTGGCG
AAGATGCTGC CGCTGGCACT GTTCATCGTG ATCGCCGCCA TCGCCTTCAA GCTGGACGTG
TTCACCTCGG ACTTCTGGGG CCGCGGCAAC CCCGAGCTGG GCAGCGTGAT GGATCAGGTG
CGCAACATGA TGCTGGTCAC CGTCTGGGTG TTCATCGGCA TCGAGGGGGC GAGCATCTTC
TCTGCCCGCG CCGAGAAACG CAGCGACGTC GGCAAGGCCA CGGTGATCGG TTTCGTCGGC
GTGCTCCTGC TGCTGGTGCT GGTCAACGTG CTGAGCCAGG GCATCATGGC CCAGGCCGAG
CTGGCCGGGC TGAAGAACCC GTCGATGGCC GGGGTGCTGG AACAGGTGGT CGGCCCCTGG
GGCGCGCAAC TGATCGCCAT CGGCCTGATC GTCTCGCTGG CCGGGGCCCT GCTGTCCTGG
ACCCTGCTGT GCGCGGAGAT CCTCTTCGCC AGCGCCCGCG ACCACACCAT GCCGGAGTTC
CTGCGCAAGG AGAACGCCAA TCAGGTGCCG GCCAATGCAC TGTGGCTGTC CAACGGGCTG
ATCCAGCTGT TTCTGATCAT CACCCTGTTC AACGCCTCCA CCTACCTGAG CCTGCTGTAC
CTGGCCACCT CGATGATCCT GGTGCCCTAC TTCTGGTCCA GCGCCTATGC GCTGCTGCTG
GCGGTGCGCG GCGAGACCTA TGAGAGCGCC GCCAGCGAAC GCAGCAAGGA TCTGCTGATC
GCCCTGGTTT CCACCCTCTA TGCCATCTGG CTGGTTTACG CCGCTGGCAT CCAGTACCTG
CTGCTGTCCG CTCTGCTCTA CGCCCCCGGC GCGATCCTGT TCGCCAAGGC CAAGCGTGAG
CTGGGCCAGC CCATCTTCAC CGGCGTCGAA AAGCTCATTT TCCTCGCCGT GCTGATAGGT
GCCGCCATTG CCGCCTACGG GCTGTATGAC GGTTTCCTGA CTCTCTAG
 
Protein sequence
MSDSSQKLRL AALVALVVGS MVGGGIFSLP QNIAASASAG ATLIGWLITG VGMLTLAFVF 
QTLANRKPEL DGGVYAYAKA GFGDYMGFSS AWGYWISAWI GNVSYMVLLF STLGYFFPVF
GEGNTLPAVI CASVLLWLLH FLVLRGIKEA AFINTVTTVA KMLPLALFIV IAAIAFKLDV
FTSDFWGRGN PELGSVMDQV RNMMLVTVWV FIGIEGASIF SARAEKRSDV GKATVIGFVG
VLLLLVLVNV LSQGIMAQAE LAGLKNPSMA GVLEQVVGPW GAQLIAIGLI VSLAGALLSW
TLLCAEILFA SARDHTMPEF LRKENANQVP ANALWLSNGL IQLFLIITLF NASTYLSLLY
LATSMILVPY FWSSAYALLL AVRGETYESA ASERSKDLLI ALVSTLYAIW LVYAAGIQYL
LLSALLYAPG AILFAKAKRE LGQPIFTGVE KLIFLAVLIG AAIAAYGLYD GFLTL