Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1109 |
Symbol | |
ID | 5108082 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 1245675 |
End bp | 1247102 |
Gene Length | 1428 bp |
Protein Length | 475 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640502333 |
Product | arginine/ornithine antiporter |
Protein accession | YP_001186608 |
Protein GI | 146306143 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0531] Amino acid transporters |
TIGRFAM ID | [TIGR00905] transporter, basic amino acid/polyamine antiporter (APA) family |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.28189 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGACT CGTCACAAAA ACTGCGCCTG GCTGCACTGG TCGCCCTGGT CGTCGGCTCC ATGGTCGGCG GCGGTATCTT CTCCCTGCCG CAGAACATCG CCGCCAGCGC CAGCGCCGGC GCCACGCTGA TCGGCTGGTT GATCACCGGG GTGGGCATGC TGACCCTGGC CTTCGTGTTC CAGACCCTGG CCAACCGCAA GCCCGAACTC GACGGCGGGG TCTACGCCTA CGCCAAGGCC GGCTTCGGCG ACTACATGGG TTTCTCCTCG GCCTGGGGCT ACTGGATCAG CGCCTGGATC GGCAACGTCA GCTACATGGT GCTGCTGTTC TCCACCCTGG GTTACTTCTT CCCCGTGTTC GGCGAGGGCA ACACCCTGCC GGCGGTGATC TGCGCCTCGG TGCTGCTCTG GCTGCTGCAC TTTCTGGTGC TGCGCGGAAT CAAGGAGGCG GCCTTTATCA ACACGGTGAC CACGGTGGCG AAGATGCTGC CGCTGGCACT GTTCATCGTG ATCGCCGCCA TCGCCTTCAA GCTGGACGTG TTCACCTCGG ACTTCTGGGG CCGCGGCAAC CCCGAGCTGG GCAGCGTGAT GGATCAGGTG CGCAACATGA TGCTGGTCAC CGTCTGGGTG TTCATCGGCA TCGAGGGGGC GAGCATCTTC TCTGCCCGCG CCGAGAAACG CAGCGACGTC GGCAAGGCCA CGGTGATCGG TTTCGTCGGC GTGCTCCTGC TGCTGGTGCT GGTCAACGTG CTGAGCCAGG GCATCATGGC CCAGGCCGAG CTGGCCGGGC TGAAGAACCC GTCGATGGCC GGGGTGCTGG AACAGGTGGT CGGCCCCTGG GGCGCGCAAC TGATCGCCAT CGGCCTGATC GTCTCGCTGG CCGGGGCCCT GCTGTCCTGG ACCCTGCTGT GCGCGGAGAT CCTCTTCGCC AGCGCCCGCG ACCACACCAT GCCGGAGTTC CTGCGCAAGG AGAACGCCAA TCAGGTGCCG GCCAATGCAC TGTGGCTGTC CAACGGGCTG ATCCAGCTGT TTCTGATCAT CACCCTGTTC AACGCCTCCA CCTACCTGAG CCTGCTGTAC CTGGCCACCT CGATGATCCT GGTGCCCTAC TTCTGGTCCA GCGCCTATGC GCTGCTGCTG GCGGTGCGCG GCGAGACCTA TGAGAGCGCC GCCAGCGAAC GCAGCAAGGA TCTGCTGATC GCCCTGGTTT CCACCCTCTA TGCCATCTGG CTGGTTTACG CCGCTGGCAT CCAGTACCTG CTGCTGTCCG CTCTGCTCTA CGCCCCCGGC GCGATCCTGT TCGCCAAGGC CAAGCGTGAG CTGGGCCAGC CCATCTTCAC CGGCGTCGAA AAGCTCATTT TCCTCGCCGT GCTGATAGGT GCCGCCATTG CCGCCTACGG GCTGTATGAC GGTTTCCTGA CTCTCTAG
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Protein sequence | MSDSSQKLRL AALVALVVGS MVGGGIFSLP QNIAASASAG ATLIGWLITG VGMLTLAFVF QTLANRKPEL DGGVYAYAKA GFGDYMGFSS AWGYWISAWI GNVSYMVLLF STLGYFFPVF GEGNTLPAVI CASVLLWLLH FLVLRGIKEA AFINTVTTVA KMLPLALFIV IAAIAFKLDV FTSDFWGRGN PELGSVMDQV RNMMLVTVWV FIGIEGASIF SARAEKRSDV GKATVIGFVG VLLLLVLVNV LSQGIMAQAE LAGLKNPSMA GVLEQVVGPW GAQLIAIGLI VSLAGALLSW TLLCAEILFA SARDHTMPEF LRKENANQVP ANALWLSNGL IQLFLIITLF NASTYLSLLY LATSMILVPY FWSSAYALLL AVRGETYESA ASERSKDLLI ALVSTLYAIW LVYAAGIQYL LLSALLYAPG AILFAKAKRE LGQPIFTGVE KLIFLAVLIG AAIAAYGLYD GFLTL
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