| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1097 |
|---|
| Symbol | |
|---|
| ID | 5108070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 1232773 |
|---|
| End bp | 1234113 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640502321 |
|---|
| Product | outer membrane porin |
|---|
| Protein accession | YP_001186596 |
|---|
| Protein GI | 146306131 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00000158939 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.0454814 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATTC TCAAACTCAG CTGTCTCGCC CTGGCCATCG GTGCCGTGGC CTCGCAGGCT
GCCGTCGCTG GTCAGCAGCA GGAAGCCAAG GGGTTCATCG AGGACAGCAG CCTGCAGCTG
ATCAACCGCA ACTTCTACAT GAACCGCGAC TACCGTCATG GCGGCAGCAA CAGCCAGGGC
ATCAACCGCG CCAAGCCGGC CAACGAGCGT AATGGCTATC GCGAAGAGTG GGCACACGGT
GCGCAACTGA ACTTCAGCTC CGGTTTCACC CAGGGTACCG TCGGTGTCGG CGCCGATGCC
TTCGCCTATG GCGGCGTCAA GCTCGATACC GGCCGCGGTC GCGTGGGCAA CGGCCTGCTG
CCGATCAGCA ACAACCGCAC CGCCGATGCC GAGGTGCCGG ACAGCTACGG CCAGATCGGC
GGTGCGGTGA AGATGCGCGC CTCTTCCACC GAGCTGAAGT ACGGCGAGAT GCGCCCGACC
GCACCGGTGT TCGCCACCGG CGATTCGCGT CTGCTGCCGG AGACCGCCAC CGGCTTCCAG
ATTTCCAGCA ACGAGTTCGA CGCGCTGTCC TTCGAGGCCG GCCACTTCAC CTCGATCAAC
CGCCGCAACT CCACCAACTC CGATGACGAC ATGACCAGCG AATACGCCGA GGTGGAGGCG
CGCAGCGTCG ACTTCGCCGG CCTCAGCTAC GCGGTCAATG ACGATCTGAG CCTGATGTTC
TATGCCAGCG AGGCCAAGGA CGTCTGGCGT CAGTACTTCG CCAACCTGAA CTACAACATC
CCGCTGGCCG ATAGCCAGGC GCTGAACTTC GACCTGGTGG CGTACAAGAC CCGCGACGAG
GGCGAGGCGC GTGCCGGCGA GCTGGACACC CTGACCTGGT CGCTCAAGGG TGCCTACAGC
TTCGGCGCGC ACAAGCTCAG CCTGGCCTAT CAGAAGGTGC GTGGCGACGA GTTCTTCGAC
TACATCGGCG GCGACTCCAT CTGGCTGGCC AACTCGGTGC AGTACTCCGA CTTCAACGCC
CCCAACGAGC GCTCGGTGCA GATCCGCTAC GACCTGAACA TGAAGCACTA CGGCGTTCCC
GGCCTGACCT TCATGGCGCG CTACATCAAG GGCGACGACA TCGACGGCAC CAAGGCCGAT
CCGAATGGCG CCTTCGCCGG CTGGGCCGGT GACGACGAGA AGCATTGGGA ACGCGATCTG
GAAGCGCGCT ACGTGTTCCA GGAAGGCGCG GCCAAGGACC TGTCGCTGCG TCTGCGTCAC
GCCACTCACC GCTCCACGGC ATTCGACGAC GACCTCGACG AGGTGCGCCT GATCATCGAG
TACCCGCTGA GCATCCTGTA A
|
|---|
| Protein sequence | MNILKLSCLA LAIGAVASQA AVAGQQQEAK GFIEDSSLQL INRNFYMNRD YRHGGSNSQG
INRAKPANER NGYREEWAHG AQLNFSSGFT QGTVGVGADA FAYGGVKLDT GRGRVGNGLL
PISNNRTADA EVPDSYGQIG GAVKMRASST ELKYGEMRPT APVFATGDSR LLPETATGFQ
ISSNEFDALS FEAGHFTSIN RRNSTNSDDD MTSEYAEVEA RSVDFAGLSY AVNDDLSLMF
YASEAKDVWR QYFANLNYNI PLADSQALNF DLVAYKTRDE GEARAGELDT LTWSLKGAYS
FGAHKLSLAY QKVRGDEFFD YIGGDSIWLA NSVQYSDFNA PNERSVQIRY DLNMKHYGVP
GLTFMARYIK GDDIDGTKAD PNGAFAGWAG DDEKHWERDL EARYVFQEGA AKDLSLRLRH
ATHRSTAFDD DLDEVRLIIE YPLSIL
|
|---|
| |