| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1072 |
|---|
| Symbol | |
|---|
| ID | 5107731 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 1209378 |
|---|
| End bp | 1210340 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640502296 |
|---|
| Product | MerR family transcriptional regulator |
|---|
| Protein accession | YP_001186571 |
|---|
| Protein GI | 146306106 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0789] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 0.653703 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCATGA CGACCGAAAG CATGGCCGGC GAAGAAGCCG GCAACGACTA CCGGCAGATC
CTCGACCAGG GCTACCTGCC CATCCGCGAG GTGGCGCGCA GCACCGGCAT CAATGCCGTC
ACCCTGCGCG CCTGGGAACG CCGCTACGGC CTGATCGTGC CGTACCGCAC ACCCAAGGGG
CACCGCCTCT ACTCACCGGC CAACCTCGAG CGCATCCACG CCATCCTCGC CTGGCTGGCG
CGGGGCGTGG CGGTGGGCCA GGTCAAGGCC CTGCTCGACC ACGGCCATAC GCCGCAGGCG
CCGAGCACCG ACAACTGGAG CCGCCAGCGC AACGAGCTGC TGGAGTGCAT CGCCGAGCTC
AACGAGCGGC GTCTGGACGA GCGTTTCAAT GCCGCGCTGG CGCTGTATCC GGCCAGCACC
CTGGCCGAAC AGCTGCTCTG GCCGCTGTTT GGCGATCTGC GCCAGCGCTG GCAAGGCCAG
TTCGGTGCAC GGCTGGAGCA GGTGTTCTTC TTCTCCTGGC TGCGCAGCAA GCTGGCCACC
CGCATCTACC ACGGCAACCG TCAGCTCGGC GGGGCGCCGC TGCTGCTGAT CAACCTCGGC
GAGGCGCCGA TGGAGCCGGG GCTGTGGCTC AGCGCCTGGC TGGCCAGCGC CAGCGATTGC
CCGGTGGAGG TATTCGACTG GCCGCTGCCG CCTGGCGAAC TGCTGACCGC CGTCGAGCAG
ATCGCCCCGC GCGCGCTGCT GCTGTACGCC GAGCAGACGC TGGACGGCGC TCTGCTGCGC
CGCCACCTGC CACGCCTGGC CGCACAGAGC CCGGTACCGG TGCTGATCGC CGGCCCGTCC
GCCCATATTC ACCGCGACGC GTTGGCCGAC CTGCAGTCGG CGGTCGACCC GCTCGCCGCG
CACGCCTGGC TGCAGCGTCA CGGCCTGCTC GGCGCCCGAG AGGTAAACCC ATGCAGCAAC
TGA
|
|---|
| Protein sequence | MPMTTESMAG EEAGNDYRQI LDQGYLPIRE VARSTGINAV TLRAWERRYG LIVPYRTPKG
HRLYSPANLE RIHAILAWLA RGVAVGQVKA LLDHGHTPQA PSTDNWSRQR NELLECIAEL
NERRLDERFN AALALYPAST LAEQLLWPLF GDLRQRWQGQ FGARLEQVFF FSWLRSKLAT
RIYHGNRQLG GAPLLLINLG EAPMEPGLWL SAWLASASDC PVEVFDWPLP PGELLTAVEQ
IAPRALLLYA EQTLDGALLR RHLPRLAAQS PVPVLIAGPS AHIHRDALAD LQSAVDPLAA
HAWLQRHGLL GAREVNPCSN
|
|---|
| |