| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1058 |
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| Symbol | |
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| ID | 5107717 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1195440 |
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| End bp | 1197167 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640502282 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001186557 |
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| Protein GI | 146306092 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | [TIGR02996] repeat-companion domain TIGR02996 |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.364915 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.506531 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGAC CCCTCGCGCT AGTCACCGCA CTCGCCTTCC TCAGCGGCTG CCAAACCTTC
GCCCCCAGCG AGCCGGACGG TACGCCGCCG GTGCAGGAAG CCGACCAGAC CACCCAACTG
GAACCGAGCG AATACGGCTC GTTCAGCCAG GAAACCCTGT TCGCCCTGCT CACCGCCGAA
CTGGCCGGGC AGCGCAACCG CTTCGACATC GCCCTCGGCA ACTACGTGCA GCAGGCCCAG
GCCACCGGCG ACGCCGGTGT CGCCGAGCGC GCCTTCCGCA TCGCCGAATA CCTCGGTGCC
GAACAGGCAG CGCTGGACAC CGCGCTGATC TGGGCCGAGA ACGCGCCGAG CAACATCGAC
GCGCAGCGCG CCGCCGCCGT GCAGTTGGCC CGTGCCGGTC GCTATGACGA ATCCATGGTG
TTCATGGAAA GCGTGCTCAA GCGCCAGGGC GACACCCATT TCGACTTCCT CGCACTGTCC
GCCGCGGAAA CCGACCCGGA CACCCGCGCC GGCCTGCTGC AAGGGTTCGA CCGCCTGCTG
GCCAAGCATC CGGACAACAG CCAGCTGCTG TTCGGCAAGG CCATTCTGCT GCAGCAGGAC
GGCCGTGCCG AAGAGGCCCT GGAGCTGCTC GAAGCGCAAC CGGCCAGCCA GACCGAGGTG
TCGCCGCTGC TGCTGCGCGC ACGCCTGCTG CAAAGCCTGA AACGTGGCGA CGAAGCCCTG
CCCCTGCTGC AGAAAGGCAT TCGCAAACAT CCGGACGACA AGCGCCTGCG CCTGACCTAC
GCCCGCCTGC TGGTCGAGCA GGACCGTCTC GACGAGGCCA AGGGCGAGTT CTCCAAACTG
GTGCAGGAAA ACCCCAACGA CGACGACCTG CGTTTCTCCC TGGCCCTGGT GTGCCTGGAG
GCCGAGGCCT GGGAAGAGGC CATCGTCTAC CTGGAAGAAC TGATCGAACG CCGCAGCCAC
GTCGACGCCG CGCATTTCAA CCTCGGCCGC GCCTACGAGG CGCTGGAAGA CATCAACAGT
GCGCTGCAGG AATACAGCCT GGTCGGCCCG AGCAACGATT ACCTGCCAGC CCAGCAGCGC
CAGGCCGAAC TGCTGCTGCG CCAGCAGCGT ACCGAGGAAG CCCGCGCACG CCTGGCCAAA
GCCCGCGATG CCCAGCCCGA CTACGCCATC CAGCTGTACC TGATCGAGGC CGAAGGCCTG
AGCAACAGGC GCCAGATCGA ACCGGCCTGG AGCGCGATCA ACCAGGGCCT GGAACAGTTC
CCCAACGACC TGAACCTGCT CTATACCCGT GCCATGCTGG CGGAAAAACG CGACGATCTG
GGCCAACTGG AAACCGATCT GCGCTACATC CTCGAGCGCG AGCCGGACCA CGCCATGGCG
CTCAACGCGC TGGGCTATAC CCTGGCCGAC CGCACCACCC GCTACGAGGA AGCCCGTGAA
CTGATCGAAA AGGCGCACCA GCTGAGCCCG CAGGACCCGG CCATTCTCGA CAGCCTGGGT
TGGGTCAACT ACCGCCTGGG CAACCTGGAA GAAGCCGAGC GCCTGCTGCG CCAGGCCCTG
GAGAAATTCC CCGACCATGA GGTGGCGGCC CACCTCGGCG AGGTGCTCTG GGCCCAGGGC
AAGCAGCGCG AAGCCCGCCG CGTCTGGCGC GACGCCCTCG TCGAAACGCC CGACAGCACC
ATTCTGCGCG ACACCCTGTT GCGCCTGACC GGCTCCGAGA CCCTTTGA
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| Protein sequence | MNRPLALVTA LAFLSGCQTF APSEPDGTPP VQEADQTTQL EPSEYGSFSQ ETLFALLTAE
LAGQRNRFDI ALGNYVQQAQ ATGDAGVAER AFRIAEYLGA EQAALDTALI WAENAPSNID
AQRAAAVQLA RAGRYDESMV FMESVLKRQG DTHFDFLALS AAETDPDTRA GLLQGFDRLL
AKHPDNSQLL FGKAILLQQD GRAEEALELL EAQPASQTEV SPLLLRARLL QSLKRGDEAL
PLLQKGIRKH PDDKRLRLTY ARLLVEQDRL DEAKGEFSKL VQENPNDDDL RFSLALVCLE
AEAWEEAIVY LEELIERRSH VDAAHFNLGR AYEALEDINS ALQEYSLVGP SNDYLPAQQR
QAELLLRQQR TEEARARLAK ARDAQPDYAI QLYLIEAEGL SNRRQIEPAW SAINQGLEQF
PNDLNLLYTR AMLAEKRDDL GQLETDLRYI LEREPDHAMA LNALGYTLAD RTTRYEEARE
LIEKAHQLSP QDPAILDSLG WVNYRLGNLE EAERLLRQAL EKFPDHEVAA HLGEVLWAQG
KQREARRVWR DALVETPDST ILRDTLLRLT GSETL
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