| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1056 |
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| Symbol | ipk |
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| ID | 5106556 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1193690 |
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| End bp | 1194565 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640502280 |
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| Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
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| Protein accession | YP_001186555 |
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| Protein GI | 146306090 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
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| TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.062568 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 0.496966 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGCG CCACCATCCC CGCCCACGCC GAACTGATCC TGCCCGCCCC GGCCAAGCTC
AACCTGATGC TGCATATCCT CGGCCGCCGT GCCGATGGCT ATCACCAGCT GCAGACCCTG
TTCCAGTTCC TCGACCACGG CGACGAGCTC GGCTTCAGCG TTCGCCAGGA CGGCGAGATT
CGCCTGCATA CACCCATTGA CGGCGTACCA CACGCCAGCA ACCTGATCGT GCGCGCGGCC
AAAAGGCTGC AGGAAGCGTC CGGCACCACG CTGGGCGCCG ATATCTGGCT GGACAAGCGC
CTGCCCATGG GTGGCGGCAT CGGCGGCGGC AGCTCGGACG CCGCCACCAC CTTGCTCGGC
CTCGACCACC TGTGGCACAC CCGCCTGGGC GAAGATCGCC TGGCCGAAAT CGGCCTGGCC
CTGGGCGCCG ACGTGCCGGT ATTCGTGCGC GGCCGCGCGG CCTTCGCCGA GGGCGTAGGC
GAGCTTCTGA CACCGGTGGA ACTGGAGGAA CCCTGGTTCC TCGTCGCCGT ACCGCAAGTC
TTTGTAAGCA CAGCAGAAGT TTTCGGCGCG CCCGAGTTGA CACGCGATAC GCCGCCCATT
AAAGTTCGCA GCCTTCTTGC GGGGGGTGGT CGAAACGACT GCCAGCCGGT GGTCGAGAAG
CGTTATCCAG AGGTTCGTAA CGCTTTGATC TTGTTGAACA AATTTGTTTC AGCTAGATTG
ACCGGCACTG GAGCTTGCAT ATTTGGGAGC TTCCCAAATC GGGACGATGC TGATAAAGTC
GCCCGCCAAC TTCCAGGCAC TCTGCCGAGC TTTGTCGCTC AAGGTCGCAA CATCTCGATG
CTGCACCGCA GGCTCCAAGC ATTGGCCAAG AAGTGA
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| Protein sequence | MTSATIPAHA ELILPAPAKL NLMLHILGRR ADGYHQLQTL FQFLDHGDEL GFSVRQDGEI
RLHTPIDGVP HASNLIVRAA KRLQEASGTT LGADIWLDKR LPMGGGIGGG SSDAATTLLG
LDHLWHTRLG EDRLAEIGLA LGADVPVFVR GRAAFAEGVG ELLTPVELEE PWFLVAVPQV
FVSTAEVFGA PELTRDTPPI KVRSLLAGGG RNDCQPVVEK RYPEVRNALI LLNKFVSARL
TGTGACIFGS FPNRDDADKV ARQLPGTLPS FVAQGRNISM LHRRLQALAK K
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