Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1050 |
Symbol | |
ID | 5107709 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1187618 |
End bp | 1189180 |
Gene Length | 1563 bp |
Protein Length | 520 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640502272 |
Product | transposase IS66 |
Protein accession | YP_001186549 |
Protein GI | 146306084 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3436] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.103704 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGCCG TGCCCGCCCC CCTTCCTGAC GACCCAATCC TGCTCAAGCA TTTACTGCTG CTGGCCAGTG AACAGGCGGC TGCGAAAGAT GCTCGCATAG AACAACTTCA GGAACAGGTC GCCCTGCTGC GCCACAAGTT GTTCTCGCCC AAGTCCGAGC GCAGCCCTGA AGACGCCGAC TCACCGCAGT TGGCCATGTT CAACGAGGTC GAAGAGCTGA TCGAAGCGGC CGCTGCGCCA AGCGAAGCCG AAGCCGAAGC CGAAGCCGAA GCCGAAGAAA TCGTTGCGCC GGTCAAGCGC CGTGGCAAGC GCAAGCCGTT GCCGGCCAAC CTGCCGCGTG TCGAAGTCAT CCACGACCTG CCCGAGCACG AGCTGACTTG CGCCTGTGGC GCCTGCAAAC AAGTCATCGG CGAGGAGACC AGCGAACAGC TGGAGATTAT CCCGATGCAG GTGCGGGTCA TCCGCCATAT CCGCAAGACC TACGCCTGCA AGGCCTGCGA AGCGGCGCCG CTCACTGCCG ACAAGCCGGC CCAACTGATC GAGAAGAGCC TGGCCAGCCC CAGCGTGTTG GCCATGCTGC TGACCACCAA GTACGCCGAC GGCATCCCGC TGTACCGCTT CGAGAAGATG CTCAGCCGCC ACGGCGTCGA CATACCACGC CAGACCCTGG CGCGCTGGGT GATCCAGAGC GGTGAACAGC TGCAACCGCT GCTCAACCTG CTGCGCGACA AGCTGCTCGA ATACCCCGTT TTGCACTGCG ACGAAACGCG CCTGCAGGTG CTGCATGAAC CGGGACGCGA TCCCACCGCG CAGTCCTGGA TGTGGGTACA AAGCGGTGGA CCACCGGATA AGCCGGTGAT CCTCTTCGAC TACACCGCCA GCCGCGCGCA GGAGGTGCCG CTGCGCTTGC TCGACGGCTA TCGCGGCTAC CTGATGACCG ACGACTACGC CGGCTACAAC GCCGTGGCCG CGCAAGAAGG CATCGAACGC CTCGGCTGCT GGGCGCATGC GCGGCGCAAG TTCGTCGAGG CGCAGAAAGT GCAACCCAAG GGCAAAACCG GCCGTGCCGA CATGGCGCTG AACCTGATCA ACAAGCTCTA CGGCATCGAG CGTGACCTGA AGGACGCCTG CGATACCGAG CGCCTGGTCG CCCGTCAGCA ACGCAGCCAG CCGCTGCTCG ATCAACTCAA GACCTGGCTG GACAAGACCC AGCCGCAGGT CGTCGGGCAG ACGGCGCTGG GCAGGGCGGT GAACTACCTG GCCAGCAACT GGAGAAAGCT GGTGCGCTAC GTCGAAGGTG GACATCTGCC GATCGACAAC AACCGCGCGG AGAACGCCAT CCGCCCGTTC GTTATCGGGC GCAAGAACTG GCTGTTCAGC GACACGCCCA AGGGGGCCAC GGCCAGCGCA CAGATCTACA GCCTGATCGA AACCGCCAAG GCCAATGGCC AGGAGCCTTA CGCCTGGCTG CGCCACATCC TCGAACGCCT GCCGGCCGCC AATAGCGTCG AGGATTACGA AGCGCTGCTG CCGTGGAATT GCTCGCCAGT GAGCGCATCC TGA
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Protein sequence | MIAVPAPLPD DPILLKHLLL LASEQAAAKD ARIEQLQEQV ALLRHKLFSP KSERSPEDAD SPQLAMFNEV EELIEAAAAP SEAEAEAEAE AEEIVAPVKR RGKRKPLPAN LPRVEVIHDL PEHELTCACG ACKQVIGEET SEQLEIIPMQ VRVIRHIRKT YACKACEAAP LTADKPAQLI EKSLASPSVL AMLLTTKYAD GIPLYRFEKM LSRHGVDIPR QTLARWVIQS GEQLQPLLNL LRDKLLEYPV LHCDETRLQV LHEPGRDPTA QSWMWVQSGG PPDKPVILFD YTASRAQEVP LRLLDGYRGY LMTDDYAGYN AVAAQEGIER LGCWAHARRK FVEAQKVQPK GKTGRADMAL NLINKLYGIE RDLKDACDTE RLVARQQRSQ PLLDQLKTWL DKTQPQVVGQ TALGRAVNYL ASNWRKLVRY VEGGHLPIDN NRAENAIRPF VIGRKNWLFS DTPKGATASA QIYSLIETAK ANGQEPYAWL RHILERLPAA NSVEDYEALL PWNCSPVSAS
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