| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1002 |
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| Symbol | |
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| ID | 5108624 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1130230 |
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| End bp | 1132548 |
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| Gene Length | 2319 bp |
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| Protein Length | 772 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640502219 |
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| Product | penicillin-binding protein 1B |
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| Protein accession | YP_001186502 |
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| Protein GI | 146306037 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | [TIGR02071] penicillin-binding protein 1B |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000000000067337 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTCGAA AACGCTCCCC CCGCTCAAGC AAGAAATCCC GTTCCTCCGG CCTGCGCCCC
TGGCTCGCCT GGGGCCTCAA GCTCGGTCTC GTCGGCTTGG TCATCCTCGC CGGTTTTGCC
GTCTATCTCG ATGCCGTGGT GCAGGAGAAA TTCTCCGGCA AGCGCTGGAC GGTGCCGGCC
AAGGTCTATG CACGTCCGCT GGAACTGTTC GTCGGCCAGA AGCTGGCCAA GGACGACTTC
CTGCGCGAAC TGGACGCCCT GGGTTATCGC CGCGAGAGCG CGGTGAAAGG CCCGGGGGCG
GTATCGGTGG CGGGCAACAA TATCGAACTG CACAGCCGCG GGTTCCAGTT CTACGAGGGC
GCCGAGCCGT CGCAGCATGT GCGGGTGCGC TTCTCCGGCG ATTTCGTGGC GGGGCTGACG
CAGGCCGATG GCAGCAATCT GGCCGTGGCG CGTCTGGAGC CTTTGCTGAT CGGTGGGCTG
TACCCGGCGC ATCAGGAAGA TCGCATCCTG ATCAAGCTGG ATCAGGTGCC GGCCTATCTC
ATCGATGCAC TGGTGGCAGT GGAGGACCGC GACTATTTCG ATCACTTCGG CGTCTCGCCC
AAGGGCATCG CCCGTGCGCT GTGGATCAAC GCCACCTCCG GTCGTCTGGT GCAGGGCGGC
AGTACCCTGA CCCAGCAGTT GGTGAAGAAC TTCTACCTGA CCAACGAGCG CACGCTCGGG
CGCAAGATCA CCGAAGCGAT GATGGCCGTG TTGCTGGAGT TGCATTACGA CAAGCGCGAG
ATTCTCGAGG CGTACATGAA CGAGGTGTTC CTCGGTCAGG ACGGTCAACG CGCGGTCCAC
GGCTTCGGCC TGGCCAGTCA GTATTTCTTC AGTCAGCCGG TTTCCGAGCT CAAGCTCGAG
CAGGTCGCGT TGCTGGTCGG CATGGTCAAG GGGCCGACTT TCTACAACCC GAGGCGCAAC
CCCGAGCGTG CGCTGGAGCG CCGCAATCTG GTGCTTGATC TGCTGGCGGA GCAGGGCTCG
ATCAGCCTCG AGGAAGCGGC TGCGGCCAAG CAGCGGCCGC TGGGCGTGAC CACGCGCGGC
AGCATGGCGG ACAGTTCTTT CCCGGCGTTC CTCGACCTGG TCAAGCGTCA GTTGCGTGAA
GACTATCGAG AGCAGGATCT GACCGAGGAA GGCTTGCGCA TCTTCACCAG TTTCGACCCG
ATCCTGCAGC TCAAGGCCGA AGAGGCGCTG GCCGAGACGC TCAAGCGCCT GGCCGGGCGC
AAGGGGGTGG ACGAGGTGCA GGCCGGGATG GTGGTGACCA ATCCCGAGAC CGGTGAGGTC
CAGGCGCTGA TCGGCAGCAG GCAGCCGCGC TTTGCCGGCT TCAACCGCGC GCTGGATGCG
GTGCGGCCGA TCGGCTCGCT GATCAAACCG GCGATCTACC TGGCGGCCCT GGAGCGGCCG
AGCCAGTACA CCCTGACCAG CTGGCTGGAG GACGAACCCT TCTCCATCAA GGGGCAGGAC
GGGCAGGTCT GGACGCCGCA GAACTTCGAT CGCAAGGCGC ATGGCACCAT CTACCTGTAC
CAAGGCCTGG CCCAGTCCTA CAACCTGTCC ACGGCCAAGC TCGGCTTGGA AATCGGCGTA
CCCAACGTGC TCAAGACTCT CGAGCGGCTT GGGGTGGAGC GCAAGTGGCC GGCCTATCCC
TCGATGCTGC TGGGGGCGGG CGCATTGACG CCGATGGAAG TGGCGGACAT GTACCAAACC
CTGGCCAACG GCGGCTTCAA TACACCGCTG CGTGGCATTC GCAGTGTGCT CACCGCCGAT
GGTGAGCCGC TCGGGCGTTA TCCCTTCCAG ATCCAGCAGC GCTTCGACCC CGGCGCCATC
TACCTGGTGC AGAACGCCAT GCAGCGCACC ATGCGCGAGG GCACCGGGCG CTCGGTCTAC
AACCAGCTGC CCAGTTCGCT GAATCTGGCC GGCAAGACCG GTACCAGCAA CGACTCGCGC
GACAGCTGGT TCGCCGGTTT CAGCCAGGAC CTGCTGGCCG TGGTCTGGCT CGGCCGTGAC
GATAACGGTC CGACACCCCT GACCGGCGCC ACGGGCGCCC TGCAGGTGTG GGCGGGTTTC
ATGCGCAAGG CCGATCCGCT GCCGCTGGAC ATGCCGATGC CGGACAACGT CGCCCAGGCC
TGGGTGGACC GTCAGACCGG TCTGGGCTCG GCCTCGGGGT GCCCGAATGC GGTACAGATG
CCTTATATTC GCGGCAGTGA GCCGGCCCCG GGCTCCGCCT GTGGATTCCA GGCACCGGTC
GAGTCGGTGA TGGACTGGGT ACGCGGCTGG TTGGATTGA
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| Protein sequence | MTRKRSPRSS KKSRSSGLRP WLAWGLKLGL VGLVILAGFA VYLDAVVQEK FSGKRWTVPA
KVYARPLELF VGQKLAKDDF LRELDALGYR RESAVKGPGA VSVAGNNIEL HSRGFQFYEG
AEPSQHVRVR FSGDFVAGLT QADGSNLAVA RLEPLLIGGL YPAHQEDRIL IKLDQVPAYL
IDALVAVEDR DYFDHFGVSP KGIARALWIN ATSGRLVQGG STLTQQLVKN FYLTNERTLG
RKITEAMMAV LLELHYDKRE ILEAYMNEVF LGQDGQRAVH GFGLASQYFF SQPVSELKLE
QVALLVGMVK GPTFYNPRRN PERALERRNL VLDLLAEQGS ISLEEAAAAK QRPLGVTTRG
SMADSSFPAF LDLVKRQLRE DYREQDLTEE GLRIFTSFDP ILQLKAEEAL AETLKRLAGR
KGVDEVQAGM VVTNPETGEV QALIGSRQPR FAGFNRALDA VRPIGSLIKP AIYLAALERP
SQYTLTSWLE DEPFSIKGQD GQVWTPQNFD RKAHGTIYLY QGLAQSYNLS TAKLGLEIGV
PNVLKTLERL GVERKWPAYP SMLLGAGALT PMEVADMYQT LANGGFNTPL RGIRSVLTAD
GEPLGRYPFQ IQQRFDPGAI YLVQNAMQRT MREGTGRSVY NQLPSSLNLA GKTGTSNDSR
DSWFAGFSQD LLAVVWLGRD DNGPTPLTGA TGALQVWAGF MRKADPLPLD MPMPDNVAQA
WVDRQTGLGS ASGCPNAVQM PYIRGSEPAP GSACGFQAPV ESVMDWVRGW LD
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