| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1001 |
|---|
| Symbol | |
|---|
| ID | 5108623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 1128552 |
|---|
| End bp | 1130207 |
|---|
| Gene Length | 1656 bp |
|---|
| Protein Length | 551 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640502218 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001186501 |
|---|
| Protein GI | 146306036 |
|---|
| COG category | [R] General function prediction only
[S] Function unknown |
|---|
| COG ID | [COG0645] Predicted kinase
[COG2187] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0358581 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 1.18173e-16 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGGGCCA GCAGCGCCGT CCGGATGGTT TGCAGAGCCG CGCACAGCCG CCATAATGCC
GGCCTAAAAC AGCGTCTAGA ACAAGGATCG AACGTGAGCC AAGCCCTGAT TGCCGCATTG
CAGAACCCGG CCCTGTATCC GCATCCGGTG GAAGGTTTTC AGCTGATAGA GACCCATATT
TCCTGGGTTT TGCTCACTGG CCCCTATGCC TACAAGATCA AGAAACCGGT GAATTTCGGC
TTTCTCGACT TCACCACGCT CGATGCGCGC AAACATTTTT GCGAAGAAGA GCTGCGCCTC
AACCAGCGCC TGACCCAGGA TTTGTATCTG GAAGTGTTGC CGATTGGTGG TAGCGAAGCT
GCACCGACCC TGAACGACGG TGCTCCGGCC ATCGAGTACG CCCTGAAGAT GCGCCAGTTC
CCCCAGGAGA ACCTGCTCAG CGAAATCCAG GCGCGCGGCG AACTGAACGA CGCCCATATC
GATGCACTGG CCGAGCAGAT CGCCACCTTT CACCTGAACG CACCGCAGGT ACCGCAGGAA
CATCCGCTGG GTAGCGCAGA AGCGGTGATG GCTCCGGTGC AGCAGAACTT CGACCAGATT
CGCCCGATGC TCAGCGAGCA GGCGGACCTG CAGCAACTCG AAGCACTCGA AGCCTGGGCA
CAGTCCAGCT ATCAGCGCCT GCAGCCACTG CTGGCCGAAC GCAAGGCGCA GGGCTTCATC
CGCGAGTGCC ACGGCGATAT TCACCTGGGT AACGCCGCAC AGATCGACGG TCGCGTGGTG
CTGTTCGATT GCATCGAATT CAACGAGCCC TTCCGCCTGA CCGACGTCAC CGCGGATATC
GCCTTTCTCG CCATGGACCT GGAAGACCGC GGCCTCAAGT GCCTGTCACG CCGCTTCGTC
AGCGGCTGGC TGGAGCACAC CGGCGACTAC GCTGCGCTGC ACCTGCTGAA CTTCTACAAG
GCCTACCGCG CCATGGTGCG GGGCAAGGTC GCGCTGTTCC GCCTGGGCCA GGAGCAGGAC
CCGGTACAGC GCGCGGTCAT TCTGCGCCAG TACCGCGGTT ACGCCGCACT GGCGGAAAGC
TACAGCGCCA TCCCCTCGCC CTTCCTGGTC ATTACCCATG GCGTTTCGGC CGTCGGCAAG
AGCCATGTCG CCCTGCGTCT GGTCGAGGCA CTCGGCAACA TTCGCTTGCG CTCCGACGTA
GAGCGCAAGC GCCTGTTCGG CGAGCAGAGC GCAGATGACA AAGGCCAGTT GGCCGGCGGC
ATCTACAACG CGCAAGCCAG CCAGGCTACC TACGAGCGCC TGCACCAGCT CGCTCGCCAG
ACGCTCCAGG CCGGCTTCCC GGTGATAATC GACGCCACCT ACCTCAAGCT CGAGCAGCGT
CAGGCGGCCA GCGAAATTGC CGAGCAGACC GGCGTACCCT TCCTGATTCT CGACTGCCAG
GCCCCCGACG CCGTGATCGC CAGCTGGCTG GAGCAGCGGC AGAGCGAGGG CAGAGACCCC
TCCGACGCCA CTCTGGAAGT GATACAGGCG CAACAGGCGG CACGCGAGCC GCTCGACGAG
GAGGAGCTGA GCCACAGCAA GCGTGTCGAC ACCCACGACG CCGCCAGCCT GGACAGCCTG
GTCGAGCGCA TCCGCCAACG CCTGCCGGGA ATCTGA
|
|---|
| Protein sequence | MRASSAVRMV CRAAHSRHNA GLKQRLEQGS NVSQALIAAL QNPALYPHPV EGFQLIETHI
SWVLLTGPYA YKIKKPVNFG FLDFTTLDAR KHFCEEELRL NQRLTQDLYL EVLPIGGSEA
APTLNDGAPA IEYALKMRQF PQENLLSEIQ ARGELNDAHI DALAEQIATF HLNAPQVPQE
HPLGSAEAVM APVQQNFDQI RPMLSEQADL QQLEALEAWA QSSYQRLQPL LAERKAQGFI
RECHGDIHLG NAAQIDGRVV LFDCIEFNEP FRLTDVTADI AFLAMDLEDR GLKCLSRRFV
SGWLEHTGDY AALHLLNFYK AYRAMVRGKV ALFRLGQEQD PVQRAVILRQ YRGYAALAES
YSAIPSPFLV ITHGVSAVGK SHVALRLVEA LGNIRLRSDV ERKRLFGEQS ADDKGQLAGG
IYNAQASQAT YERLHQLARQ TLQAGFPVII DATYLKLEQR QAASEIAEQT GVPFLILDCQ
APDAVIASWL EQRQSEGRDP SDATLEVIQA QQAAREPLDE EELSHSKRVD THDAASLDSL
VERIRQRLPG I
|
|---|
| |