Gene Pmen_1000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1000 
Symbol 
ID5108622 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1128120 
End bp1128476 
Gene Length357 bp 
Protein Length118 aa 
Translation table11 
GC content63% 
IMG OID640502217 
Productpentapeptide repeat-containing protein 
Protein accessionYP_001186500 
Protein GI146306035 
COG category[S] Function unknown 
COG ID[COG1357] Uncharacterized low-complexity proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000366371 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value5.80978e-19 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGAGCCAGC CGCGCCAGCT TGATCACCCG CTCTACGCCC TGCTGCACAA CGACGACGTC 
AAGGGCTTCA ATGCCAAGAA GCCCAAAGAT GCCGAGGTGG ACATGTCGGG CGGCGACTTT
CGTGGGCTGG ACCTGCGCAA CCTGGACACC GAGGGCGTCA ACTTCACCGA CGCCTATTTC
CGCGGTGCCG ACCTGCGCGG GCTCGACCTG CGCAAGGCCA AGATCGAAGG CGCCAGCCTC
GCCCACGCGC AGATTTCCGG CGCCTACTTT CCCGTCGAAC TGACCGCGGA CGAAATTCTC
ATGTCGGTGA ATTTCGGCAC ACGCCTGCGC TATCGAACCA GGCAGACCGA GCCTTGA
 
Protein sequence
MSQPRQLDHP LYALLHNDDV KGFNAKKPKD AEVDMSGGDF RGLDLRNLDT EGVNFTDAYF 
RGADLRGLDL RKAKIEGASL AHAQISGAYF PVELTADEIL MSVNFGTRLR YRTRQTEP