Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1000 |
Symbol | |
ID | 5108622 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 1128120 |
End bp | 1128476 |
Gene Length | 357 bp |
Protein Length | 118 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640502217 |
Product | pentapeptide repeat-containing protein |
Protein accession | YP_001186500 |
Protein GI | 146306035 |
COG category | [S] Function unknown |
COG ID | [COG1357] Uncharacterized low-complexity proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00000366371 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 5.80978e-19 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGAGCCAGC CGCGCCAGCT TGATCACCCG CTCTACGCCC TGCTGCACAA CGACGACGTC AAGGGCTTCA ATGCCAAGAA GCCCAAAGAT GCCGAGGTGG ACATGTCGGG CGGCGACTTT CGTGGGCTGG ACCTGCGCAA CCTGGACACC GAGGGCGTCA ACTTCACCGA CGCCTATTTC CGCGGTGCCG ACCTGCGCGG GCTCGACCTG CGCAAGGCCA AGATCGAAGG CGCCAGCCTC GCCCACGCGC AGATTTCCGG CGCCTACTTT CCCGTCGAAC TGACCGCGGA CGAAATTCTC ATGTCGGTGA ATTTCGGCAC ACGCCTGCGC TATCGAACCA GGCAGACCGA GCCTTGA
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Protein sequence | MSQPRQLDHP LYALLHNDDV KGFNAKKPKD AEVDMSGGDF RGLDLRNLDT EGVNFTDAYF RGADLRGLDL RKAKIEGASL AHAQISGAYF PVELTADEIL MSVNFGTRLR YRTRQTEP
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