| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0987 |
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| Symbol | |
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| ID | 5108609 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1116078 |
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| End bp | 1117175 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640502204 |
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| Product | carboxynorspermidine decarboxylase |
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| Protein accession | YP_001186487 |
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| Protein GI | 146306022 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01047] carboxynorspermidine decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.728912 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0000164001 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCCAGA CGCCGTACTA CCTCATCGAC AAACAGAAGC TCCTGGTCAA CCTGGAGAAG
ATCGCCTACG TGCGCGAGAA CTCCGGCGCC AAGGCGCTGC TGGCGCTGAA ATGCTTTGCC
ACCTGGTCGG TGTTCGACCT GATGCAGCAA TATATGGACG GCACCACCTC ATCGTCCCTC
TATGAGTTGA AGCTCGGCCG GCAGAAGTTC GCCGGCGAAA CCCACGCCTA CAGCGTGGCC
TGGGCCGACG ACGAGATCGA AGAGATGGTC GCCAACTGCG ACAAGATCAT CTTCAACTCC
ATCGGCCAGC TCGAACGCTT CGCCGAGCGG ACCGAGGGCA CCATCCGCGG CCTGCGCGTC
AACCCGCAGG TGAGCAGCTC CGACTACCTG CTGGCCGACC CGGCGCGTCC GTTCAGCCGC
CTCGGCGAGT GGGATCCGGA AAAGATCGCC AAGGTCATGG GGCAGATTTC CGGCTTCATG
TTCCACAACA ACTGCGAGAA CGGCAGCTTC GAGCTGTTCG ACAAGATGCT GAGCACCATC
GAGGAGCGCT TCGGCCACCT GATCGCCCAG GTCGAGTGGG TCAGCCTCGG CGGCGGCATC
CACTTCACTG GCGAGGGCTA TCCGATCGAT GCCTTCTGCG CGCGCCTGAA AGCCTTCTCG
GAAAAATACG GCGTGCAGGT GTATCTGGAG CCGGGCGAAG CGGCGATCAC CCTCAGCGCC
TCGCTGGAAG TGACCGTGCT CGACACCCTG TACAACGGCA AGAACCTGGC GGTGGTCGAC
AGCTCCATCG AAGCGCACAT GCTTGATCTC TTGATCTACC GCCTCAACGC CAAGATGGCG
CCGAATGACG GCGAACACAC CTACATGGTC TGCGGTAAGA GCTGCCTGGC CGGCGATATC
TTCGGCGAGT ACCAGTTCGA CAAGCCGCTC AAGATCGGTG ACCGTCTGTC GTTCATCGAC
GCGGCCGGTT ACACCATGGT CAAGAAGAAC TGGTTCAACG GCCTGAAGAT GCCGTCCATC
GTGGTGAAAC AACTCGACGG TAGCATCGAA GTGGTTCGCC AGTTCGAGTT CGACGACTAC
CTGTCCAGCC TGTCCTGA
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| Protein sequence | MIQTPYYLID KQKLLVNLEK IAYVRENSGA KALLALKCFA TWSVFDLMQQ YMDGTTSSSL
YELKLGRQKF AGETHAYSVA WADDEIEEMV ANCDKIIFNS IGQLERFAER TEGTIRGLRV
NPQVSSSDYL LADPARPFSR LGEWDPEKIA KVMGQISGFM FHNNCENGSF ELFDKMLSTI
EERFGHLIAQ VEWVSLGGGI HFTGEGYPID AFCARLKAFS EKYGVQVYLE PGEAAITLSA
SLEVTVLDTL YNGKNLAVVD SSIEAHMLDL LIYRLNAKMA PNDGEHTYMV CGKSCLAGDI
FGEYQFDKPL KIGDRLSFID AAGYTMVKKN WFNGLKMPSI VVKQLDGSIE VVRQFEFDDY
LSSLS
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