| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0977 |
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| Symbol | |
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| ID | 5108599 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1101725 |
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| End bp | 1103698 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640502194 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001186477 |
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| Protein GI | 146306012 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.411883 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.0692156 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCTGC GCAGACGACT GTTCTCGCTA TTCGCCCCGC TACTGCTCCT GACCCTGCTG
CTCGTTCAGC TGCTGTCCAA CCAGTTGCTG CTGAGCCGCT TCGACCAGCA AGACAAGCAG
CGCCTCCAGG AAACGGCGCA CAGGGCTCAC CTGATCCTGC TCGGCCATAT CGAACGCACC
ACCGGCCTGC TGCACAGCTA TGCCTGGTGG GACCCCAGCT ACGAGCTGGC TCAGGGCCGC
GGCGACTCCA GCCTCTACCT GCGGCAGAAT CTCGACAGCC TGCAGCTGGC CAACTACGAC
TTCGACTTCA TGGCGCTGTT CGACGATGCC GGCAAACTGG TGCTGGAACA GTGGGCGCCG
CCCGACCTGG CGGACCTGCT GCCGGTCGGC CACGACCGGC CACGCAGCAT TGCCAGCCTG
CGCAGCGATA TCTACAGCCG CAGCCAGCGC CTGAATCTGC TTCGGCACCA AAGCGATGCG
CAGTTCAGAA CCGGCCAGGT GCTGCTGATC CAAGGCGTGC CCGTGCTGCT GGTCAGCAGC
GCCGTGAGCA ACAGCCAGGG CACCGCCAGC GCTGTCGGCA CCCTGCTGGC CGGCCGCTTT
CTCGACGGGC AGCGCCTGCA TGCGCTGGAC CGGCAATTGC CCGGCAGCAG CCTGCGCCTG
CTTCCCGCGG GCGTCGACCC GAAGGGCTGG CAGCCGCTGC CGGAGCGCCA GACATTCACC
GCCGAGCTTG GCCCACGCAG GCTGCTGGAC GAGCAGCAGC AACAGATCGA GCTGCTGCTC
AACAACAGCG ACGATGAGCC AGAGCTGCGT CTGCAGCTGA CCTCTCAGCG CATCAACTAC
CACAAGGGCA AGGAGGCCAT CGAGTTCTTC CTCAGCGTCA GCTTCCTCAT CGCCCTGGCT
GCCGCCGGCC TGGTCTATCT CGGCCTGGAA TACTGGGTCC TGCACCGTCT GGAACGCCTC
AACCGGGAAA TCGGCGGTAT CGGGCAGCAG GCTCGCCTGC CTCGGGTGAG CAGCCTGGGC
AATGACGAAC TGGGCGAGCT GGCCTCCGCG CTGAACCAGA TGCTCGAACG TCTCGACCAG
AGCGAGGAGC GCGACCGGGC GATCCTCGAG TCGATCCAGG ACGGCTACTT CGAGGTGGAC
GCAGAGGGAC GCTTCACCCG GGTCAATCGC GGCATGGAAC TGTCCCTCGG CTATCGCAGC
GAGGAGCTGC TGAACATGCC CTTCACCCAG CTGCTGCTGA CGGAGAAGGT CGAACAGGCC
GAGACCACCT TCCAGCAGGC GCAGCAGGAC AGCAGTCTCA GCGGCTTCAA CCTGCAGCTG
CGTCGTGCCG ATGGCAGCCT GGGCGACTTC GAGGGGCGAC TGTCGCAGAT CCATACCCAG
GACGGGACCT TCGTCGGCTA TCGCGGCATC CTGCGCGACA TTTCCGAGCG CGCCGCGCAC
CAGCGTCATC TGCATGACCT CGCCTATCGC GACCCGCTGA CCAGCCTGGG CAACCGCAAG
GCCTTTCACG AGCAGTTGCA GGGGGATCTG CAGCAGACCC TGAACGAAGG CAGCGTACTG
GCGCTGTTCT TCATCGACCT GGACCACTTC AAGCAGGTCA ACGACCAGTA TGGCCACGAC
GCCGGCGATG CCCTGCTCTG CGCCATCGCC GCCAGGCTGC AGCATGGCCT GCGGCAACCC
GGCAAGCTCT ACCGCCTGGG GGGCGACGAA TTCACCCTGC TCATGCCACA GGCCACCGCC
GAAGCGGCCC GGGCGCTGGG CGAGCGCCTG CTCGGCAGCC TTGGTGCGCC GTTCGAGATC
GCCGGACACA GCATCGATTT TGTCACGCCC AGTGTCGGCA TCGCCCTCTG CCCGCAGCAC
GCCACGGCCA GCGAGGCGCT GATCAAGGCC GCCGACAGCG CCATGTACCA GGCCAAACGC
AAGCGCAATC AGGTCGTGAT CTTCGAGCCG TCGGCCGCTG CCGAAACACA CTGA
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| Protein sequence | MTLRRRLFSL FAPLLLLTLL LVQLLSNQLL LSRFDQQDKQ RLQETAHRAH LILLGHIERT
TGLLHSYAWW DPSYELAQGR GDSSLYLRQN LDSLQLANYD FDFMALFDDA GKLVLEQWAP
PDLADLLPVG HDRPRSIASL RSDIYSRSQR LNLLRHQSDA QFRTGQVLLI QGVPVLLVSS
AVSNSQGTAS AVGTLLAGRF LDGQRLHALD RQLPGSSLRL LPAGVDPKGW QPLPERQTFT
AELGPRRLLD EQQQQIELLL NNSDDEPELR LQLTSQRINY HKGKEAIEFF LSVSFLIALA
AAGLVYLGLE YWVLHRLERL NREIGGIGQQ ARLPRVSSLG NDELGELASA LNQMLERLDQ
SEERDRAILE SIQDGYFEVD AEGRFTRVNR GMELSLGYRS EELLNMPFTQ LLLTEKVEQA
ETTFQQAQQD SSLSGFNLQL RRADGSLGDF EGRLSQIHTQ DGTFVGYRGI LRDISERAAH
QRHLHDLAYR DPLTSLGNRK AFHEQLQGDL QQTLNEGSVL ALFFIDLDHF KQVNDQYGHD
AGDALLCAIA ARLQHGLRQP GKLYRLGGDE FTLLMPQATA EAARALGERL LGSLGAPFEI
AGHSIDFVTP SVGIALCPQH ATASEALIKA ADSAMYQAKR KRNQVVIFEP SAAAETH
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