| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0962 |
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| Symbol | |
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| ID | 5108820 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1087271 |
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| End bp | 1087759 |
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| Gene Length | 489 bp |
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| Protein Length | 162 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640502179 |
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| Product | Tfp pilus assembly protein FimT-like protein |
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| Protein accession | YP_001186462 |
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| Protein GI | 146305997 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.582094 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGGCC CAGTGGCAAG CCGAGGTTTT ACCCTGATAG AGCTGATAAT AGTCCTAGCG
CTTCTGGCCA TCGTCTCGTT CATCGCGGTG CCGAATTTCA TGGACCTCAT CGAACGCAAC
CGCATACAGA CCCAGGCTCA GGAGCTGCAA GCATTCCTTC TTTACGCTCG TGGCGAGGCG
GTCAGCCGCG GCACCAGCAT CACCGTGGCT CTTGACGAGA ACGACGATGA TCTGTGGGTA
GCCAAGCGCA ACTCGGGCGA AGTGATCCGG CAACTGATCC AGAACCCCGA GCTGGTACAG
ATAGATTCCA GCGTCGACGA AGTCCGTTTC AGAAGCAATG GCACTGCTAC GGTAGCGAGT
TTTGTCGTCT GCAAAGACGG TGACACTGGG CGAGGGTTTT CCCTGCAAAT CCAGGCTAGT
GGCGCTATCA CGCTGAGTCA GGCTGGCAAG AACACTGACG GCAACGATCT GAACAGTTGC
ACCCTGTGA
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| Protein sequence | MSGPVASRGF TLIELIIVLA LLAIVSFIAV PNFMDLIERN RIQTQAQELQ AFLLYARGEA
VSRGTSITVA LDENDDDLWV AKRNSGEVIR QLIQNPELVQ IDSSVDEVRF RSNGTATVAS
FVVCKDGDTG RGFSLQIQAS GAITLSQAGK NTDGNDLNSC TL
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