| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0959 |
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| Symbol | |
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| ID | 5108817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1085213 |
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| End bp | 1085860 |
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| Gene Length | 648 bp |
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| Protein Length | 215 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640502176 |
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| Product | Tfp pilus assembly protein PilX-like protein |
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| Protein accession | YP_001186459 |
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| Protein GI | 146305994 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4726] Tfp pilus assembly protein PilX |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.564691 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGATT TTCCTAGACA CCGTCAAAAC GGCGCCGTAC TTCTCGTTGC CCTAGTCATG
CTTCTCGTGC TCACTCTGCT GGCAGTCAGC AGCATGCGTA GCGTCACTCT GGAAACACGC
ATCACCGCTA ACCGTTCGCA AAGTGTACAA CTGGTCAATG TCGCGGAAGC AGGTCTGCGC
GAAGCAGAAT TCCGTTTTTA CGGTCCAGCC AACTTAGCCG ACAAACTCAA TGCCAACCCC
GCCAACTGCA ACACGAACAA CACCTTGAAG ACCAATGGTT TGAACAAACC CTGCCTGTTG
GCAATCGTCA ACGACAAACT GCAGGACTTC GTCGAAACCC CCCAAGATAT TGACAGCAGC
TTCCTTGACT CTGACTCAAG CGGCGGCCTG ATCTGGATGC CTTATCGAGG TACGGATGCG
GCAAACATAA CCGCTCCCAG TGGCAGCCAC ATTGCCCAGT GGAACAGTAT GCTGGCCGGG
CAAAGCGAGA CTGCCGCAGT CAATGCTGAA TACCCTCTGC CCTTGGAGGG GGGGGGTACC
CACTTTTACC TGAACAACGC CAGAGCCATC CCGAAAGAGG GCCATAGTGG CGGCGTAACT
TACGTACAGT CAACGCACGC CAATATTTAC CTCGGCCTCA ATAACTGA
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| Protein sequence | MTDFPRHRQN GAVLLVALVM LLVLTLLAVS SMRSVTLETR ITANRSQSVQ LVNVAEAGLR
EAEFRFYGPA NLADKLNANP ANCNTNNTLK TNGLNKPCLL AIVNDKLQDF VETPQDIDSS
FLDSDSSGGL IWMPYRGTDA ANITAPSGSH IAQWNSMLAG QSETAAVNAE YPLPLEGGGT
HFYLNNARAI PKEGHSGGVT YVQSTHANIY LGLNN
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