| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0946 |
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| Symbol | upp |
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| ID | 5108804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1069183 |
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| End bp | 1069821 |
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| Gene Length | 639 bp |
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| Protein Length | 212 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640502163 |
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| Product | uracil phosphoribosyltransferase |
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| Protein accession | YP_001186446 |
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| Protein GI | 146305981 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0035] Uracil phosphoribosyltransferase |
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| TIGRFAM ID | [TIGR01091] uracil phosphoribosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.0868465 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.525652 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCCACTC GCGAGATCCG CCACCCGCTG ATCCGTCACA AGATCGGCCT GATGCGCCGC
GCCGATATCA GTACCAAGAA TTTCCGCGAG CTGGCTCAGG AAGTCGGCGC TCTGCTGACC
TATGAAGCCA CCAACGACCT GCCGCTGGAA AGCTACGAGA TCGAGGGCTG GGCGGGCGCC
GTGCAGGTGG AGAAGATCGC CGGCAAGAAG ATCACCGTGG TGCCCATCCT GCGCGCCGGC
ATCGGCATGC TCGACGGCGT GCTCAGCCTG ATCCCGGGCG CCAAGGTCAG CGCCGTAGGC
GTGGCGCGCA ACGAGGAGAC CCTCGAAGCG CATACCTATC TGGAGAAGCT CGCACCGGAA
ATCGACTCGC GCCTGGCCCT GATCATCGAC CCGATGCTGG CCACCGGCGG CTCCATGGTC
GCTACCATCG ACCTGCTGAA GAAGGCCGGC TGCAAGGACA TTCGCGCCAT GGTGCTGGTC
GCCGCCCCCG AAGGCATCAA GGCAGTCGAG CAGGCGCACC CGGACGTGAC CATCTTCACC
GCCTCCATCG ATCAGCGTCT GAACGAACAC GGCTACATCA TTCCGGGCCT GGGTGATGCT
GGCGACAAGA TTTTCGGCAC CAAGCAGAAG GACGCCTGA
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| Protein sequence | MPTREIRHPL IRHKIGLMRR ADISTKNFRE LAQEVGALLT YEATNDLPLE SYEIEGWAGA
VQVEKIAGKK ITVVPILRAG IGMLDGVLSL IPGAKVSAVG VARNEETLEA HTYLEKLAPE
IDSRLALIID PMLATGGSMV ATIDLLKKAG CKDIRAMVLV AAPEGIKAVE QAHPDVTIFT
ASIDQRLNEH GYIIPGLGDA GDKIFGTKQK DA
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